Evidence map›Paper›PMID 23646867›Full record

ArticleMolecular microbiology2013

Dynamic responses of Bacteroides thetaiotaomicron during growth on glycan mixtures.

Theresa E Rogers, Nicholas A Pudlo, Nicole M Koropatkin, Joshua S K Bell, Monica Moya Balasch, Kevin Jasker, Eric C Martens

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 147 citations in OpenAlex.

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  10. Lessons from the model gut BacteroidalesJournal of bacteriology · 2025
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  13. Bacterial polysaccharide lyase family 33: Specificity from an evolutionarily conserved binding tunnel.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  17. Article
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  20. Article

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Theresa E RogersDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Nicholas A Pudlo
Nicole M Koropatkin
Joshua S K Bell
Monica Moya Balasch
Kevin Jasker
Eric C Martens
University of Michigan–Ann Arbor · US

Funding

University of Michigan Center for Gastrointestinal ResearchP30DK034933 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI OWYANG, CHUNG · 1986 to 2021
$22.5M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008490 · NIGMS · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 1993 to 2022
$8.0M
How glycans shape gut microbiota function and assemblyR01GM099513 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARTENS, ERIC C · 2013 to 2016
$1.2M
Complex glycan utilization by human gut BacteroidesK01DK084214 · NIDDK · WASHINGTON UNIVERSITY · PI MARTENS, ERIC C · 2009 to 2013
$584k
NIDDK NIH HHS DK034933NIDDK NIH HHS DK084214NIDDK NIH HHS K01 DK084214NIDDK NIH HHS P30 DK034933NIGMS NIH HHS R01 GM099513NIGMS NIH HHS T32 GM008490
6 · The paper itself

Abstract

Bacteroides thetaiotaomicron (Bt) is a human colonic symbiont that degrades many different complex carbohydrates (glycans), the identities and amounts of which are likely to change frequently and abruptly from meal-to-meal. To understand how this organism reacts to dynamic growth conditions, we challenged it with a series of different glycan mixtures and measured responses involved in glycan catabolism. Our results demonstrate that individual Bt cells can simultaneously respond to multiple glycans and that responses to new glycans are extremely rapid. The presence of alternative carbohydrates does not alter response kinetics, but reduces expression of some glycan utilization genes as well as the cell's sensitivity to glycans that are present in lower concentration. Growth in a mixture containing 12 different glycans revealed that Bt preferentially uses some before others. This metabolic hierarchy is not changed by prior exposure to lower priority glycans because re-introducing high priority substrates late in culture re-initiates repression of genes involved in degrading those with lower priority. At least some carbohydrate prioritization effects occur at the level of monosaccharide recognition. Our results provide insight into how a bacterial glycan generalist modifies its responses in dynamic glycan environments and provide essential knowledge to interpret related metabolic behaviour in vivo.

Indexed as

Adaptation, PhysiologicalBacteroidesGene Expression Regulation, BacterialMetabolic Networks and PathwaysPolysaccharidesPolysaccharides

Identifiers

PMID23646867
PMCPMC3700664
OpenAlexW1492873152

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.