Evidence map›Paper›PMID 23646184›Full record

ArticlePloS one2013

Phylogenetic and evolutionary analysis of Chinese Leishmania isolates based on multilocus sequence typing.

Chun-Ying Zhang, Xiao-Jun Lu, Xiao-Qing Du, Jun Jian, Ling Shu, Ying Ma

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 48 citations in OpenAlex.

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  4. Mutation Characteristics and Phylogenetic Analysis of FiveAnimals : an open access journal from MDPI · 2022
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  10. Molecular Diagnosis of Visceral Leishmaniasis.Molecular diagnosis & therapy · 2018
    Review
  11. Article
  12. Article
  13. Comparison of Leishmania typing results obtained from 16 European clinical laboratories in 2014.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2016
    Article
  14. Detection, molecular typing and phylogenetic analysis ofParasite epidemiology and control · 2016
    Article
  15. Article
  16. Review
  17. Article
  18. Species typing in dermal leishmaniasis.Clinical microbiology reviews · 2015
    Review
  19. Article
  20. Genetic Diversity and Phylogenetic Study ofIranian journal of parasitology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Chun-Ying ZhangDivision of Clinical Microbiology, Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu, People's Republic of China.
Xiao-Jun Lu
Xiao-Qing Du
Jun Jian
Ling Shu
Ying Ma
Sichuan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Leishmaniasis is a debilitating infectious disease that has a variety of clinical forms. In China, visceral leishmaniasis (VL) is the most common symptom, and L. donovani and/or L. infantum are the likely pathogens. In this study, multilocus sequence typing (MLST) of five enzyme-coding genes (fh, g6pdh, icd, mpi, pgd) and two conserved genes (hsp70, lack) was used to investigate the phylogenetic relationships of Chinese Leishmania strains. Concatenated alignment of the nucleotide sequences of the seven genes was analyzed and phylogenetic trees were constructed using neighbor-joining and maximum parsimony models. A set of additional sequences from 25 strains (24 strains belong to the L. donovani complex and one strain belongs to L. gerbilli) were retrieved from GenBank to infer the molecular evolutionary history of Leishmania from China and other endemic areas worldwide. Phylogenetic analyses consolidated Chinese Leishmania into four groups: (i) one clade A population comprised 13 isolates from different foci in China, which were pathogenic to humans and canines. This population was subdivided into two subclades, clade A1 and clade A2, which comprised sister organisms to the remaining members of the worldwide L. donovani complex; (ii) a population in clade B consisted of one reference strain of L. turanica and five Chinese strains from Xinjiang; (iii) clade C (SELF-7 and EJNI-154) formed a population that was closely related to clade B, and both isolates were identified as L. gerbilli; and (iv) the final group, clade D, included Sauroleishmania (LIZRD and KXG-E) and was distinct from the other strains. We hypothesize that the phylogeny of Chinese Leishmania is associated with the geographical origins rather than with the clinical forms (VL or CL) of leishmaniasis. To conclude, this study provides further molecular information on Chinese Leishmania isolates and the Chinese isolates appear to have a more complex evolutionary history than previously thought.

Indexed as

Multilocus Sequence TypingPhylogenyAnimalsAntigens, ProtozoanChinaEvolution, MolecularGenes, ProtozoanHSP72 Heat-Shock ProteinsHumansLeishmaniaLeishmaniasisPolymorphism, GeneticProtozoan ProteinsSequence Analysis, DNAAntigens, ProtozoanHSP72 Heat-Shock ProteinsLACK antigen, LeishmaniaProtozoan Proteins

Identifiers

PMID23646184
PMCPMC3639960
OpenAlexW2037329917

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.