Evidence map›Paper›PMID 23645708›Full record

ArticleRNA (New York, N.Y.)2013

RNA localization in Xenopus oocytes uses a core group of trans-acting factors irrespective of destination.

Donald D Snedden, Michelle M Bertke, Dominic Vernon, Paul W Huber

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
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  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Donald D SneddenDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, USA.
Michelle M Bertke
Dominic Vernon
Paul W Huber
University of Notre Dame · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The 3' untranslated region of mRNA encoding PHAX, a phosphoprotein required for nuclear export of U-type snRNAs, contains cis-acting sequence motifs E2 and VM1 that are required for localization of RNAs to the vegetal hemisphere of Xenopus oocytes. However, we have found that PHAX mRNA is transported to the opposite, animal, hemisphere. A set of proteins that cross-link to the localization elements of vegetally localized RNAs are also cross-linked to PHAX and An1 mRNAs, demonstrating that the composition of RNP complexes that form on these localization elements is highly conserved irrespective of the final destination of the RNA. The ability of RNAs to bind this core group of proteins is correlated with localization activity. Staufen1, which binds to Vg1 and VegT mRNAs, is not associated with RNAs localized to the animal hemisphere and may determine, at least in part, the direction of RNA movement in Xenopus oocytes.

Indexed as

3' Untranslated RegionsAnimalsBase SequenceMutagenesis, Site-DirectedOocytesPhosphoproteinsProtein BindingRibonucleoproteinsRNA-Binding ProteinsRNA, MessengerRNA TransportT-Box Domain ProteinsTrans-ActivatorsTransforming Growth Factor betaXenopusXenopus Proteins3' Untranslated RegionsGDF1 protein, XenopusPhosphoproteinsRibonucleoproteinsRNA-Binding ProteinsRNA, MessengerSTAU1 protein, XenopusT-Box Domain ProteinsTrans-ActivatorsTransforming Growth Factor betaVegT protein, XenopusXenopus ProteinsPHAXRNA localizationStaufenVg1 mRNAXenopus oocyte

Identifiers

PMID23645708
PMCPMC3683923
OpenAlexW2139562396

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.