Evidence map›Paper›PMID 23645681›Full record

ArticleThe Journal of biological chemistry2013

Developmentally regulated linker histone H1c promotes heterochromatin condensation and mediates structural integrity of rod photoreceptors in mouse retina.

Evgenya Y Popova, Sergei A Grigoryev, Yuhong Fan, Arthur I Skoultchi, Samuel S Zhang, Colin J Barnstable

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 63 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Inhibition of Epigenetic Modifiers LSD1 and HDAC1 Blocks Rod Photoreceptor Death in Mouse Models of Retinitis Pigmentosa.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Article
  13. Article
  14. Epigenetic regulation of retinal development.Epigenetics & chromatin · 2021
    Review
  15. Emergence of chromatin hierarchical loops from protein disorder and nucleosome asymmetry.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. Review
  17. Article
  18. Mesoscale modeling reveals formation of an epigenetically driven HOXC gene hub.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  19. Casz1 controls higher-order nuclear organization in rod photoreceptors.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Evgenya Y PopovaDepartment of Neural and Behavioral Sciences, Pennsylvania State University College of Medicine, Hershey, Pennsylvania 17033, USA.
Sergei A Grigoryev
Yuhong Fan
Arthur I Skoultchi
Samuel S Zhang
Colin J Barnstable
Albert Einstein College of Medicine · USGeorgia Institute of Technology · USPennsylvania State University · USSingapore National Eye Center · SG

Funding

IN VIVO ANALYSIS OF MOUSE H1 HISTONE FUNCTIONR01CA079057 · NCI · YESHIVA UNIVERSITY · PI SKOULTCHI, ARTHUR I · 1998 to 2013
$5.4M
Molecular Analysis of Retinal Ganglion Cell DeathR01EY013865 · NEI · YALE UNIVERSITY · PI BARNSTABLE, COLIN J · 2002 to 2012
$3.0M
Role of Linker Histone H1 in Epigenetic Gene RegulationR01GM085261 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI FAN, YUHONG · 2008 to 2012
$2.0M
In Vivo Analysis of Mouse H1 Histone FunctionR56CA079057 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI SKOULTCHI, ARTHUR I · 2008 to 2008
$250k
NCI NIH HHS CA079057NCI NIH HHS R01 CA079057NCI NIH HHS R56 CA079057NEI NIH HHS EY013865NEI NIH HHS R01 EY013865NIGMS NIH HHS GM085261NIGMS NIH HHS R01 GM085261
6 · The paper itself

Abstract

Mature rod photoreceptor cells contain very small nuclei with tightly condensed heterochromatin. We observed that during mouse rod maturation, the nucleosomal repeat length increases from 190 bp at postnatal day 1 to 206 bp in the adult retina. At the same time, the total level of linker histone H1 increased reaching the ratio of 1.3 molecules of total H1 per nucleosome, mostly via a dramatic increase in H1c. Genetic elimination of the histone H1c gene is functionally compensated by other histone variants. However, retinas in H1c/H1e/H1(0) triple knock-outs have photoreceptors with bigger nuclei, decreased heterochromatin area, and notable morphological changes suggesting that the process of chromatin condensation and rod cell structural integrity are partly impaired. In triple knock-outs, nuclear chromatin exposed several epigenetic histone modification marks masked in the wild type chromatin. Dramatic changes in exposure of a repressive chromatin mark, H3K9me2, indicate that during development linker histone plays a role in establishing the facultative heterochromatin territory and architecture in the nucleus. During retina development, the H1c gene and its promoter acquired epigenetic patterns typical of rod-specific genes. Our data suggest that histone H1c gene expression is developmentally up-regulated to promote facultative heterochromatin in mature rod photoreceptors.

Indexed as

Chromatin Assembly and DisassemblyGene Expression Regulation, DevelopmentalAnimalsCell NucleusEpigenesis, GeneticFemaleGene Knockout TechniquesHeterochromatinHistonesMiceMice, Inbred C57BLMice, KnockoutNucleosomesRepetitive Sequences, Nucleic AcidRetinaRetinal Rod Photoreceptor CellsH1c protein, mouseHeterochromatinHistonesNucleosomesDevelopmentHeterochromatinHistone H1cHistonesPhotoreceptorsRetinaRetina DevelopmentRod Photoreceptor

Identifiers

PMID23645681
PMCPMC3682587
OpenAlexW2037780763

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.