Evidence map›Paper›PMID 23645259›Full record

ArticlePlanta2013

Identification, characterization of an AP2/ERF transcription factor that promotes adventitious, lateral root formation in Populus.

Dalila Trupiano, Yordan Yordanov, Sharon Regan, Richard Meilan, Timothy Tschaplinski, Gabriella Stefania Scippa, Victor Busov

Abstract read
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In one paragraph

Article in Planta, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
11.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 122 citations in OpenAlex.

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  15. Bioinformatic Assessment and Expression Profiles of theInternational journal of molecular sciences · 2023
    Article
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  20. Transcription factoraBIOTECH · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 3 countries.

Dalila TrupianoDipartimento di Bioscienze e Territorio, University of Molise, Pesche, IS, Italy.
Yordan Yordanov
Sharon Regan
Richard Meilan
Timothy Tschaplinski
Gabriella Stefania Scippa
Victor Busov
Michigan Technological University · USUniversity of Molise · ITOak Ridge National Laboratory · USPurdue University West Lafayette · USQueen's University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Using activation tagging in Populus, we have identified five mutant lines showing changes in their adventitious rooting. Among the affected lines, three showed increased and two decreased adventitious rooting. We have positioned the tag in the mutant lines via recovering genomic sequences flanking the left-hand border of the activation tagging vector and validated the transcriptional activation of the proximal genes. We further characterized one line in which the cause of the observed rooting phenotype was up-regulation of a gene encoding a transcription factor of the AP2/ERF family of unknown function (PtaERF003). We show, through retransformation, that this gene has a positive effect on both adventitious and lateral root proliferation. Comparative expression analyses show that the phenotype does not result from ectopic expression but rather up-regulation of the native expression pattern of the gene. PtaERF003 function is linked to auxin signal transduction pathway, as suggested by the rapid induction and accentuated phenotypes of the transgenic plants in presence of the hormone. Upregulation of PtaERF003 led to most significant metabolic changes in the shoot suggesting of a broader regulatory role of the gene that is not restricted to root growth and development. Our study shows that dominant tagging approaches in poplar can successfully identify novel molecular factors controlling adventitious and lateral root formation in woody plants. Such discoveries can lead to technologies that can increase root proliferation and, thus, have significant economic and environmental benefits.

Indexed as

Gene Expression Regulation, PlantEthylenesGenes, DominantGenotypeIndoleacetic AcidsMutationPhenotypePlant Growth RegulatorsPlant LeavesPlant ProteinsPlant RootsPlants, Genetically ModifiedPopulusSequence Analysis, DNATranscriptional ActivationTranscription Factor AP-2ethyleneEthylenesIndoleacetic AcidsPlant Growth RegulatorsPlant ProteinsTranscription Factor AP-2

Identifiers

PMID23645259
OpenAlexW2059251131

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.