Evidence map›Paper›PMID 23644492›Full record

ArticleNature genetics2013

Genome-wide association study identifies common variants in SLC39A6 associated with length of survival in esophageal squamous-cell carcinoma.

Chen Wu, Dong Li, Weihua Jia, Zhibin Hu, Yifeng Zhou, Dianke Yu, Tong Tong, Mingrong Wang, Dongmei Lin, Yan Qiao and 9 more

Abstract read
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In one paragraph

Article in Nature genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed, 3 pooled it
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 3 syntheses or guidelines pooled it, 109 citations in OpenAlex.

  1. Pooled it
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  7. Esophageal cancer: from pathogenesis to precision therapies.Signal transduction and targeted therapy · 2026
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7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 1 country.

Chen WuState Key Laboratory of Molecular Oncology, Chinese Academy of Medical Science and Peking Union Medical College, Beijing, China.
Dong Li
Weihua Jia
Zhibin Hu
Yifeng Zhou
Dianke Yu
Tong Tong
Mingrong Wang
Dongmei Lin
Yan Qiao
Yuling Zhou
Jiang Chang
Kan Zhai
Menghan Wang
Lixuan Wei
Wen Tan
Hongbing Shen
Yixin Zeng
Dongxin Lin
Chinese Academy of Medical Sciences & Peking Union Medical College · CNState Key Laboratory of Molecular OncologyNanjing Medical University · CNSun Yat-sen University · CNSun Yat-sen University Cancer Center · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We conducted a genome-wide scan of SNPs to identify variants associated with length of survival in 1,331 individuals with esophageal squamous-cell carcinoma (ESCC), with associations validated in 2 independent sets including 1,962 individuals with this cancer. We identified rs1050631 in SLC39A6 as associated with the survival times of affected individuals, with the hazard ratio for death from ESCC in the combined sample being 1.30 (95% confidence interval (CI) = 1.19-1.43; P = 3.77 × 10(-8)). rs7242481, located in the 5' UTR of SLC39A6, disturbs a transcriptional repressor binding site and results in upregulation of SLC39A6 expression. Immunohistochemical staining of ESCC tissues showed that higher expression of SLC39A6 protein was correlated with shorter length of survival in individuals with advanced ESCC (P = 0.013). Knockdown of SLC39A6 expression suppressed proliferation and invasion in ESCC cells. These results suggest that SLC39A6 has an important role in the prognosis of ESCC and may be a potential therapeutic target.

Indexed as

AgedCarcinoma, Squamous CellCation Transport ProteinsCell Line, TumorCell MovementCell ProliferationChromosome MappingEsophageal NeoplasmsFemaleGene ExpressionGene Knockdown TechniquesGenome-Wide Association StudyHumansKaplan-Meier EstimateMaleMiddle AgedCation Transport ProteinsNeoplasm ProteinsRNA, Small InterferingSLC39A6 protein, human

Identifiers

PMID23644492
OpenAlexW2023105254

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.