Evidence map›Paper›PMID 23641178›Full record

ArticleBreeding science2013

DNA marker applications to molecular genetics and genomics in tomato.

Kenta Shirasawa, Hideki Hirakawa

Abstract read
In one paragraph

Article in Breeding science, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Near-complete genome assembly of tomato (Plant biotechnology (Tokyo, Japan) · 2024
    Article
  2. Article
  3. Fine mapping and gene cloning in the post-NGS era: advances and prospects.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Review
  4. Review
  5. Article
  6. Article
  7. Analytical workflow of double-digest restriction site-associated DNA sequencing based on empirical and in silico optimization in tomato.DNA research : an international journal for rapid publication of reports on genes and genomes · 2016
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. In silico identification and experimental validation of insertion-deletion polymorphisms in tomato genome.DNA research : an international journal for rapid publication of reports on genes and genomes · 2014
    Article
  13. Article
  14. Genome-wide association studies using single nucleotide polymorphism markers developed by re-sequencing of the genomes of cultivated tomato.DNA research : an international journal for rapid publication of reports on genes and genomes · 2013
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Kenta ShirasawaDepartment of Plant Genome Research, Kazusa DNA Research Institute , 2-6-7 Kazusa-Kamatari, Kisarazu, Chiba 292-0818, Japan.
Hideki Hirakawa

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tomato is an important crop and regarded as an experimental model of the Solanaceae family and of fruiting plants in general. To enhance breeding efficiency and advance the field of genetics, tomato has been subjected to DNA marker studies as one of the earliest targets in plants. The developed DNA markers have been applied to the construction of genetic linkage maps and the resultant maps have contributed to quantitative trait locus (QTL) and gene mappings for agronomically important traits, as well as to comparative genomics of Solanaceae. The recently released whole genome sequences of tomato enable us to develop large numbers of DNA markers comparatively easily, and even promote new genotyping methods without DNA markers. In addition, databases for genomes, DNA markers, genetic linkage maps and other omics data, e.g., transcriptome, proteome, metabolome and phenome information, will provide useful information for molecular breeding in tomatoes. The use of DNA marker technologies in conjunction with new breeding techniques will promise to advance tomato breeding.

Indexed as

databaseDNA markergenetic linkage mapgenomeprotein structuretomato (Solanum lycopersicum)

Identifiers

PMID23641178
PMCPMC3621441

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.