ArticleBreeding science2013
Functional genomics of tomato in a post-genome-sequencing phase.
Article in Breeding science, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
9 citing papers in PubMed, 15 citations in OpenAlex.
- Next-Generation Sequencing of Local Romanian Tomato Varieties and Bioinformatics Analysis of theInternational journal of molecular sciences · 2022Article
- Comparative co-expression network analysis extracts thePlant biotechnology (Tokyo, Japan) · 2019Article
- Genome-Wide Identification and Expression Analysis of the UGlcAE Gene Family in Tomato.International journal of molecular sciences · 2018Article
- Use of Natural Diversity and Biotechnology to Increase the Quality and Nutritional Content of Tomato and Grape.Frontiers in plant science · 2017Review
- Tandem Duplication Events in the Expansion of the Small Heat Shock Protein Gene Family in Solanum lycopersicum (cv. Heinz 1706).G3 (Bethesda, Md.) · 2016Article
- RNA sequencing and functional analysis implicate the regulatory role of long non-coding RNAs in tomato fruit ripening.Journal of experimental botany · 2015Article
- Functional genomics of tomato: opportunities and challenges in post-genome NGS era.Journal of biosciences · 2014Review
- Genetic regulation and structural changes during tomato fruit development and ripening.Frontiers in plant science · 2014Review
- From randomly to inevitable: Accelerating tomato breeding by comprehensive tools and information.Breeding science · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Completion of tomato genome sequencing project has broad impacts on genetic and genomic studies of tomato and Solanaceae plants. The reference genome sequence derived from Solanum lycopersicum cv 'Heinz 1706' serves as the firm basis for sequencing-based approaches to tomato genomics. In this article, we first present a brief summary of the genome sequencing project and a summary of the reference genome sequence. We then focus on recent progress in transcriptome sequencing and small RNA sequencing and show how the reference genome sequence makes these analyses more comprehensive than before. We discuss the potential of in-depth analysis that is based on DNA methylome sequencing and transcription start-site detection. Finally, we describe the current status of efforts to resequence S. lycopersicum cultivars to demonstrate how resequencing can allow the use of intraspecific genomic diversity for detailed phenotyping and breeding.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.