Evidence map›Paper›PMID 23640892›Full record

ArticleThe Journal of biological chemistry2013

Endogenous APOBEC3A DNA cytosine deaminase is cytoplasmic and nongenotoxic.

Allison M Land, Emily K Law, Michael A Carpenter, Lela Lackey, William L Brown, Reuben S Harris

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 82 citations in OpenAlex.

  1. Squamous-state excursions activate APOBEC3A in cancer.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Review
  4. Untargeted Mutation Triggered by Ribonucleoside Embedded in DNA.International journal of molecular sciences · 2024
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Human APOBEC3B promotes tumor heterogeneitybioRxiv : the preprint server for biology · 2023
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Allison M LandDepartment of Biochemistry, Molecular Biology and Biophysics, Institute for Molecular Virology, Masonic Cancer Center, and Center for Genome Engineering, University of Minnesota, Minneapolis, Minnesota 55455, USA.
Emily K Law
Michael A Carpenter
Lela Lackey
William L Brown
Reuben S Harris
University of Minnesota · US

Funding

University of Minnesota Clinical and Translational Science Institute (UMN CTSI)UL1TR000114 · NCATS · UNIVERSITY OF MINNESOTA · PI BLAZAR, BRUCE R · 2012 to 2015
$35.0M
Structural Characterization of APOBECS's Atomic interactionsP01GM091743 · NIGMS · UNIVERSITY OF MINNESOTA · PI MATSUO, HIROSHI · 2011 to 2015
$10.1M
MINNESOTA PAIN RESEARCH TRAINING PROGRAMT32DE007288 · NIDCR · UNIVERSITY OF MINNESOTA TWIN CITIES · PI HERZBERG, MARK C · 1996 to 2011
$8.8M
Minnesota Training Program in VirologyT32AI083196 · NIAID · UNIVERSITY OF MINNESOTA · PI Louis M Mansky · 2010 to 2026
$3.2M
APOBEC proteins and uracil in retrovirus restrictionR01AI064046 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI HARRIS, REUBEN S · 2005 to 2014
$3.0M
Delineating a New Mechanism of Foreign DNA Restriction in Human CellsF32GM095219 · NIGMS · UNIVERSITY OF MINNESOTA · PI CARPENTER, MICHAEL ALLEN · 2010 to 2012
$124k
CIHRNCATS NIH HHS UL1 TR000114NIAID NIH HHS R01 AI064046NIAID NIH HHS T32 AI083196NIDCR NIH HHS T32 DE007288NIDCR NIH HHS T32 DE07288NIGMS NIH HHS F32 GM095219NIGMS NIH HHS P01 GM091743
6 · The paper itself

Abstract

APOBEC3A (A3A) is a myeloid lineage-specific DNA cytosine deaminase with a role in innate immunity to foreign DNA. Previous studies have shown that heterologously expressed A3A is genotoxic, suggesting that monocytes may have a mechanism to regulate this enzyme. Indeed, we observed no significant cytotoxicity when interferon was used to induce the expression of endogenous A3A in CD14(+)-enriched primary cells or the monocytic cell line THP-1. In contrast, doxycycline-induced A3A in HEK293 cells caused major cytotoxicity at protein levels lower than those observed when CD14(+) cells were stimulated with interferon. Immunofluorescent microscopy of interferon-stimulated CD14(+) and THP-1 cells revealed that endogenous A3A is cytoplasmic, in stark contrast to stably or transiently transfected A3A, which has a cell-wide localization. A3A constructs engineered to be cytoplasmic are also nontoxic in HEK293 cells. These data combine to suggest that monocytic cells use a cytoplasmic retention mechanism to control A3A and avert genotoxicity during innate immune responses.

Indexed as

DNA DamageCell Cycle ProteinsCell SurvivalCytidine DeaminaseCytoplasmGene ExpressionHEK293 CellsHistonesHumansImmunity, InnateLipopolysaccharide ReceptorsMonocytesProteinsProtein Serine-Threonine KinasesRepressor ProteinsAPOBEC3A protein, humanCell Cycle ProteinsCytidine DeaminaseH2AX protein, humanHistonesLipopolysaccharide ReceptorsProteinsProtein Serine-Threonine KinasesRepressor ProteinsTRIB3 protein, humanAPOBEC3ACytoplasmic LocalizationDNA Cytosine DeaminationDNA DamageGamma-H2AXGenotoxicityHIVInnate ImmunityInterferonMonocytes

Identifiers

PMID23640892
PMCPMC3682529
OpenAlexW2062855385

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.