Evidence map›Paper›PMID 23640880›Full record

ArticleThe Journal of biological chemistry2013

Propofol binding to the resting state of the gloeobacter violaceus ligand-gated ion channel (GLIC) induces structural changes in the inter- and intrasubunit transmembrane domain (TMD) cavities.

Borna Ghosh, Kenneth A Satyshur, Cynthia Czajkowski

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Identification of a binding site for bupropion inbioRxiv : the preprint server for biology · 2023
    Article
  4. Article
  5. Article
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  7. Allosteric potentiation of a ligand-gated ion channel is mediated by access to a deep membrane-facing cavity.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  8. Review
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  10. Article
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  12. Article
  13. Article
  14. Review
  15. Article
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  17. Article
  18. Opposing effects of the anesthetic propofol at pentameric ligand-gated ion channels mediated by a common site.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2014
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Borna GhoshMolecular Biophysics Program, University of Wisconsin, Madison, Wisconsin 53711, USA.
Kenneth A Satyshur
Cynthia Czajkowski
University of Wisconsin–Madison · USInstitute of Molecular Biology and Biophysics · RU

Funding

STRUCTURE OF THE GABA A RECEPTOR BINDING SITESR01NS034727 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI CZAJKOWSKI, CYNTHIA M · 1997 to 2016
$6.1M
NINDS NIH HHS R01 NS034727PHS HHS 34727
6 · The paper itself

Abstract

General anesthetics exert many of their CNS actions by binding to and modulating membrane-embedded pentameric ligand-gated ion channels (pLGICs). The structural mechanisms underlying how anesthetics modulate pLGIC function remain largely unknown. GLIC, a prokaryotic pLGIC homologue, is inhibited by general anesthetics, suggesting anesthetics stabilize a closed channel state, but in anesthetic-bound GLIC crystal structures the channel appears open. Here, using functional GLIC channels expressed in oocytes, we examined whether propofol induces structural rearrangements in the GLIC transmembrane domain (TMD). Residues in the GLIC TMD that frame intrasubunit and intersubunit water-accessible cavities were individually mutated to cysteine. We measured and compared the rates of modification of the introduced cysteines by sulfhydryl-reactive reagents in the absence and presence of propofol. Propofol slowed the rate of modification of L240C (intersubunit) and increased the rate of modification of T254C (intrasubunit), indicating that propofol binding induces structural rearrangements in these cavities that alter the local environment near these residues. Propofol acceleration of T254C modification suggests that in the resting state propofol does not bind in the TMD intrasubunit cavity as observed in the crystal structure of GLIC with bound propofol (Nury, H., Van Renterghem, C., Weng, Y., Tran, A., Baaden, M., Dufresne, V., Changeux, J. P., Sonner, J. M., Delarue, M., and Corringer, P. J. (2011) Nature 469, 428-431). In silico docking using a GLIC closed channel homology model suggests propofol binds to intersubunit sites in the TMD in the resting state. Propofol-induced motions in the intersubunit cavity were distinct from motions associated with channel activation, indicating propofol stabilizes a novel closed state.

Indexed as

Allosteric RegulationAmino Acid SubstitutionAnesthetics, IntravenousAnimalsBacterial ProteinsCyanobacteriaCysteineHydrogen-Ion ConcentrationIon Channel GatingKineticsLigand-Gated Ion ChannelsMembrane PotentialsMethyl MethanesulfonateMolecular Docking SimulationMutagenesis, Site-DirectedPropofolAnesthetics, IntravenousBacterial ProteinsCysteineLigand-Gated Ion ChannelsMethyl Methanesulfonatemethyl methanethiosulfonatePropofolProtein SubunitsAllosteric RegulationAnestheticsCys-loop ReceptorsElectrophysiologyLigand-binding ProteinMembrane ProteinsProtein ConformationProtein StructureSubstituted Cysteine Accessibility Method

Identifiers

PMID23640880
PMCPMC3682542
OpenAlexW2003723244

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.