Evidence map›Paper›PMID 23638186›Full record

ArticlePloS one2013

Small GTPase Rab40c associates with lipid droplets and modulates the biogenesis of lipid droplets.

Ran Tan, Weijie Wang, Shicong Wang, Zhen Wang, Lixiang Sun, Wei He, Rong Fan, Yunhe Zhou, Xiaohui Xu, Wanjin Hong and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. AtypicalScience advances · 2022
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Interactions of Lipid Droplets with the Intracellular Transport Machinery.International journal of molecular sciences · 2021
    Review
  12. International journal of general medicine · 2021
    Article
  13. Article
  14. Knockout of butyrophilin subfamily 1 member A1 (Journal of animal science and biotechnology · 2020
    Article
  15. The evolutionary landscape of the Rab family in chordates.Cellular and molecular life sciences : CMLS · 2019
    Article
  16. Article
  17. Rab18: new insights into the function of an essential protein.Cellular and molecular life sciences : CMLS · 2019
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Ran TanSchool of Pharmaceutical Sciences, State Key Laboratory of Cellular Stress Biology, Xiamen University, Xiamen, Fujian, China.
Weijie Wang
Shicong Wang
Zhen Wang
Lixiang Sun
Wei He
Rong Fan
Yunhe Zhou
Xiaohui Xu
Wanjin Hong
Tuanlao Wang
Xiamen University · CNAgency for Science, Technology and Research · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The subcellular location and cell biological function of small GTPase Rab40c in mammalian cells have not been investigated in detail. In this study, we demonstrated that the exogenously expressed GFP-Rab40c associates with lipid droplets marked by neutral lipid specific dye Oil red or Nile red, but not with the Golgi or endosomal markers. Further examination demonstrated that Rab40c is also associated with ERGIC-53 containing structures, especially under the serum starvation condition. Rab40c is increasingly recruited to the surface of lipid droplets during lipid droplets formation and maturation in HepG2 cells. Rab40c knockdown moderately decreases the size of lipid droplets, suggesting that Rab40c is involved in the biogenesis of lipid droplets. Stimulation for adipocyte differentiation increases the expression of Rab40c in 3T3-L1 cells. Rab40c interacts with TIP47, and is appositionally associated with TIP47-labeled lipid droplets. In addition, over-expression of Rab40c causes the clustering of lipid droplets independent of its GTPase activity, but completely dependent of the intact SOCS box domain of Rab40c. In addition, Rab40c displayed self-interaction as well as interaction with TIP47 and the SOCS box is essential for its ability to induce clustering of lipid droplets. Our results suggest that Rab40c is a novel Rab protein associated with lipid droplets, and is likely involved in modulating the biogenesis of lipid droplets.

Indexed as

Lipid Metabolism3T3-L1 CellsAdipocytesAmino Acid SequenceAnimalsCarrier ProteinsCell Line, TumorGene ExpressionGene Knockdown TechniquesHumansMiceMolecular Sequence DataPerilipin-3rab GTP-Binding ProteinsSequence AlignmentSuppressor of Cytokine Signaling ProteinsCarrier ProteinsPerilipin-3Plin3 protein, mouseRab40c protein, humanRab40c protein, mouserab GTP-Binding ProteinsSuppressor of Cytokine Signaling Proteins

Identifiers

PMID23638186
PMCPMC3640056
OpenAlexW1989637243

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.