ArticlePloS one2013
Genome-wide expression analysis of soybean MADS genes showing potential function in the seed development.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.
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Who cites it
38 citing papers in PubMed, 79 citations in OpenAlex.
- Article
- Genome-Wide Characterization of the Phosphofructokinase Gene Family inInternational journal of molecular sciences · 2025Article
- Transcriptome Analysis Reveals Association of E-Class AmMADS-Box Genes with Petal Malformation inInternational journal of molecular sciences · 2025Article
- Integration of metabolite and transcriptome profiles of cultivated and wild rice to unveil gene regulatory networks and key genes determining rice source and sink strength.Functional & integrative genomics · 2025Article
- Longer Internode with Same Cell Length:Plants (Basel, Switzerland) · 2025Article
- Genome-wide analysis of MADS-box genes and their expression patterns in unisexual flower development in dioecious spinach.Scientific reports · 2024Article
- An Overview on MADS Box Members in Plants: A Meta-Review.International journal of molecular sciences · 2024Review
- Genome-wide analysis of PvMADS in common bean and functional characterization of PvMADS31 in Arabidopsis thaliana as a player in abiotic stress responses.The plant genome · 2024Article
- Genome-Wide Analyses of MADS-Box Genes Reveal Their Involvement in Seed Development and Oil Accumulation of Tea-Oil Tree (International journal of genomics · 2024Article
- Genome-wide analysis of the MADS-box gene family in Lonicera japonica and a proposed floral organ identity model.BMC genomics · 2023Article
- Genome-Wide Identification and Expression of theGenes · 2023Article
- Identification and Molecular Characterization of RWP-RK Transcription Factors in Soybean.Genes · 2023Article
- Whole-Genome Identification of APX and CAT Gene Families in Cultivated and Wild Soybeans and Their Regulatory Function in Plant Development and Stress Response.Antioxidants (Basel, Switzerland) · 2022Article
- Genome-wide analysis of MADS-box gene family in kiwifruit (Frontiers in genetics · 2022Article
- Large-Scale Integrative Analysis of Soybean Transcriptome Using an Unsupervised Autoencoder Model.Frontiers in plant science · 2022Article
- Expression of a maize SOC1 gene enhances soybean yield potential through modulating plant growth and flowering.Scientific reports · 2021Article
- Comparative Analysis of the MADS-Box Genes Revealed Their Potential Functions for Flower and Fruit Development in Longan (Frontiers in plant science · 2021Article
- Genome-wide identification and characterization of GRAS genes in soybean (Glycine max).BMC plant biology · 2020Article
- Article
- Identification and characterization of the MADS-box genes highly expressed in the laticifer cells of Hevea brasiliensis.Scientific reports · 2019Article
Corrections and comments
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Authors and funding
7 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The MADS family is an ancient and best-studied transcription factor and plays fundamental roles in almost every developmental process in plants. In the plant evolutionary history, the whole genome duplication (WGD) events are important not only to the plant species evolution, but to expansion of members of the gene families. Soybean as a model legume crop has experience three rounds of WGD events. Members of some MIKC(C) subfamilies, such as SOC, AGL6, SQUA, SVP, AGL17 and DEF/GLO, were expanded after soybean three rounds of WGD events. And some MIKC(C) subfamilies, MIKC* and type I MADS families had experienced faster birth-and-death evolution and their traces before the Glycine WGD event were not found. Transposed duplication played important roles in tandem arrangements among the members of different subfamilies. According to the expression profiles of type I and MIKC paralog pair genes, the fates of MIKC paralog gene pairs were subfunctionalization, and the fates of type I MADS paralog gene pairs were nonfunctionalization. 137 out of 163 MADS genes were close to 186 loci within 2 Mb genomic regions associated with seed-relative QTLs, among which 115 genes expressed during the seed development. Although MIKC(C) genes kept the important and conserved functions of the flower development, most MIKC(C) genes showed potentially essential roles in the seed development as well as the type I MADS.
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