Evidence map›Paper›PMID 23637905›Full record

ArticlePloS one2013

Serine proteolytic pathway activation reveals an expanded ensemble of wound response genes in Drosophila.

Rachel A Patterson, Michelle T Juarez, Anita Hermann, Roman Sasik, Gary Hardiman, William McGinnis

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Human ERG oncoprotein repressesProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  4. Wound Healing Insights from Flies and Fish.Cold Spring Harbor perspectives in biology · 2022
    Review
  5. Article
  6. Injury-induced inflammatory signaling and hematopoiesis inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Article
  8. JNK Signaling inInternational journal of molecular sciences · 2021
    Review
  9. Acute exposure of Nicotine duringmicroPublication biology · 2021
    Article
  10. Article
  11. Article
  12. Calcium Signaling in Vertebrate Development and Its Role in Disease.International journal of molecular sciences · 2018
    Review
  13. Article
  14. Article
  15. Article
  16. Toll pathway is required for wound-induced expression of barrier repair genes in theProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  17. Advances in wound care · 2016
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Rachel A PattersonSection of Cell and Developmental Biology, University of California San Diego, La Jolla, California, United States of America.
Michelle T Juarez
Anita Hermann
Roman Sasik
Gary Hardiman
William McGinnis
University of California, San Diego · USCity College of New York · US

Funding

Specificity in Homeotic Response ElementsR37HD028315 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MCGINNIS, WILLIAM JAMES · 2006 to 2015
$2.9M
SPECIFICITY IN HOMEOTIC RESPONSE ELEMENTSR01HD028315 · NICHD · YALE UNIVERSITY · PI MCGINNIS, WILLIAM JAMES · 1991 to 2005
$2.5M
NICHD NIH HHS R01 HD028315NICHD NIH HHS R01 HD28315NICHD NIH HHS R37 HD028315NIGMS NIH HHS R01 GM07797
6 · The paper itself

Abstract

After injury to the animal epidermis, a variety of genes are transcriptionally activated in nearby cells to regenerate the missing cells and facilitate barrier repair. The range and types of diffusible wound signals that are produced by damaged epidermis and function to activate repair genes during epidermal regeneration remains a subject of very active study in many animals. In Drosophila embryos, we have discovered that serine protease function is locally activated around wound sites, and is also required for localized activation of epidermal repair genes. The serine protease trypsin is sufficient to induce a striking global epidermal wound response without inflicting cell death or compromising the integrity of the epithelial barrier. We developed a trypsin wounding treatment as an amplification tool to more fully understand the changes in the Drosophila transcriptome that occur after epidermal injury. By comparing our array results with similar results on mammalian skin wounding we can see which evolutionarily conserved pathways are activated after epidermal wounding in very diverse animals. Our innovative serine protease-mediated wounding protocol allowed us to identify 8 additional genes that are activated in epidermal cells in the immediate vicinity of puncture wounds, and the functions of many of these genes suggest novel genetic pathways that may control epidermal wound repair. Additionally, our data augments the evidence that clean puncture wounding can mount a powerful innate immune transcriptional response, with different innate immune genes being activated in an interesting variety of ways. These include puncture-induced activation only in epidermal cells in the immediate vicinity of wounds, or in all epidermal cells, or specifically in the fat body, or in multiple tissues.

Indexed as

Signal TransductionAnimalsCell DeathDrosophilaDrosophila ProteinsEpidermisGene Expression ProfilingGene Expression RegulationGenes, ReporterProteolysisRegenerationSerine ProteasesTranscription, GeneticTrypsinWound HealingDrosophila ProteinsSerine ProteasesTrypsin

Identifiers

PMID23637905
PMCPMC3634835
OpenAlexW2076301035

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.