Evidence map›Paper›PMID 23637828›Full record

ArticlePloS one2013

PIN2 turnover in Arabidopsis root epidermal cells explored by the photoconvertible protein Dendra2.

Ján Jásik, Barbara Boggetti, František Baluška, Dieter Volkmann, Thomas Gensch, Twan Rutten, Thomas Altmann, Elmon Schmelzer

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Investigation ofPlant signaling & behavior · 2024
    Article
  3. Organelle Interactions in Plant Cells.Results and problems in cell differentiation · 2024
    Review
  4. Article
  5. A novel toolbox to record CLE peptide signaling.Frontiers in plant science · 2024
    Article
  6. Regulation of PIN-FORMED Protein Degradation.International journal of molecular sciences · 2023
    Review
  7. Article
  8. Specific expression ofPlant signaling & behavior · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. A Conditional Mutation inFrontiers in plant science · 2020
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Ján JásikMax Planck Institute for Plant Breeding Research, Köln, Germany. jan.jasik@yahoo.com
Barbara Boggetti
František Baluška
Dieter Volkmann
Thomas Gensch
Twan Rutten
Thomas Altmann
Elmon Schmelzer
University of Bonn · DELeibniz Institute of Plant Genetics and Crop Plant Research · DEForschungszentrum Jülich · DEMax Planck Institute for Plant Breeding Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The steady state level of integral membrane proteins is dependent on a strictly controlled delivery and removal. Here we show that Dendra2, a green-to-red photoconvertible fluorescent protein, is a suitable tool to study protein turnover in plants. We characterized the fluorescence properties of Dendra2 expressed either as a free protein or as a tag in Arabidopsis thaliana roots and optimized photoconversion settings to study protein turnover. Dendra2 was fused to the PIN2 protein, an auxin transporter in the root tip, and by time-lapse imaging and assessment of red and green signal intensities in the membrane after photoconversion we quantified directly and simultaneously the rate of PIN2 delivery of the newly synthesized protein into the plasma membrane as well as the disappearance of the protein from the plasma membrane due to degradation. Additionally we have verified several factors which are expected to affect PIN2 protein turnover and therefore potentially regulate root growth.

Indexed as

Abscisic AcidAnaerobiosisArabidopsisArabidopsis ProteinsCell MembraneCold TemperatureCycloheximideCyclopentanesDactinomycinDarknessDimethyl SulfoxideLuminescent ProteinsMicroscopy, ConfocalOxylipinsPlant RootsPlants, Genetically ModifiedAbscisic AcidArabidopsis ProteinsAT5G57090 protein, ArabidopsisCycloheximideCyclopentanesDactinomycinDendra2 protein, DendronephthyaDimethyl Sulfoxidejasmonic acidLuminescent ProteinsOxylipinsRecombinant Fusion Proteins

Identifiers

PMID23637828
PMCPMC3630207
OpenAlexW2087789414

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.