Evidence map›Paper›PMID 23637345›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Peptide library-based evaluation of T-cell receptor breadth detects defects in global and regulatory activation in human immunologic diseases.

John S Barber, Lauren K Yokomizo, Virginia Sheikh, Alexandra F Freeman, Elizabeth Garabedian, Evert van Dijk, Robert Sokolic, Fabio Candotti, Nan-ping Weng, Irini Sereti and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. T cell antigen discovery.Nature methods · 2021
    Review
  2. Primary atopic disorders.The Journal of experimental medicine · 2018
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

John S BarberLaboratory of Allergic Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
Lauren K Yokomizo
Virginia Sheikh
Alexandra F Freeman
Elizabeth Garabedian
Evert van Dijk
Robert Sokolic
Fabio Candotti
Nan-ping Weng
Irini Sereti
Joshua D Milner
University Clinic of Pulmonary and Allergic Diseases Golnik · SINational Institutes of Health · USNational Human Genome Research Institute · USNational Institute of Allergy and Infectious Diseases · USNational Institute on Aging · USPepscan (Netherlands) · NL

Funding

Immunopathogenic Mechanisms of Human Immunodeficiency Virus (HIV) DiseaseZIAAI001121 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI SERETI, IRINI · 2010 to 2025
$27.2M
Genetic and Pathophysiologic Study of Atopic DiseaseZIAAI001183 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI MILNER, JOSHUA · 2013 to 2019
$8.7M
Mechanisms Of Transcriptional Regulation in Memory lymphocyte Response and AgingZIAAG000757 · NIA · NATIONAL INSTITUTE ON AGING · PI WENG, NAN-PING PETER · 2009 to 2025
$7.9M
Molecular and Clinical Studies of Primary ImmunodeficienciesZIAHG000121 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI CANDOTTI, FABIO · 2009 to 2014
$6.2M
T-Cell Receptor Repertoires in Immune Regulation and ResponseZIAAI001099 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI MILNER, JOSHUA · 2009 to 2016
$3.4M
Intramural NIH HHS
6 · The paper itself

Abstract

The ability of T-cells to respond to foreign antigens and to appropriately regulate this response is crucial for maintaining immune homeostasis. Using combinatorial peptide libraries, we functionally measured broad T-cell reactivity and observed impaired reactivity in established models of T-cell receptor repertoire restriction and in previously unrecognized disease contexts. By concurrently analyzing T-regulatory and T-effector cells, we show strong functional correlation between these subsets in healthy individuals and, strikingly, that alterations of this balance are associated with T helper type 2 (Th2)-mediated disease in a lymphopenic setting. Finally, we demonstrate that peptide-based priming of polyclonal naive cells with relatively low concentrations skews toward Th2 differentiation. These findings provide unique insight into the pathophysiology and functional consequences of abnormal T-cell repertoires and into differentiation of human naive T-cells.

Indexed as

Gene Expression RegulationPeptide LibraryCD4-Positive T-LymphocytesCell DifferentiationCell ProliferationCell SeparationCoculture TechniquesFlow CytometryGenes, MHC Class IIHumansImmune System DiseasesLeukocytes, MononuclearLipopolysaccharide ReceptorsLymphocyte ActivationModels, StatisticalPeptidesLipopolysaccharide ReceptorsPeptide LibraryPeptidesReceptors, Antigen, T-Cellatopyimmune deficiency

Identifiers

PMID23637345
PMCPMC3657790
OpenAlexW2043523476

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.