Evidence map›Paper›PMID 23636849›Full record

ArticleHuman mutation2013

Somatic alterations contributing to metastasis of a castration-resistant prostate cancer.

Michael L Nickerson, Kate M Im, Kevin J Misner, Wei Tan, Hong Lou, Bert Gold, David W Wells, Hector C Bravo, Karin M Fredrikson, Timothy T Harkins and 7 more

Abstract readCase Reports
In one paragraph

Article in Human mutation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 59 citations in OpenAlex.

  1. Review
  2. Review
  3. Loss of TET reprograms Wnt signaling through impaired demethylation to promote lung cancer development.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. The Genomics of Prostate Cancer: A Historic Perspective.Cold Spring Harbor perspectives in medicine · 2019
    Review
  12. The HumanFrontiers in cell and developmental biology · 2019
    Article
  13. Epigenetic dysregulation ofOncotarget · 2018
    Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Rare Variation in TET2 Is Associated with Clinically Relevant Prostate Carcinoma in African Americans.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2016
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 3 countries.

Michael L NickersonCancer and Inflammation Program, National Cancer Institute, National Institutes of Health, Frederick, Maryland, USA.
Kate M Im
Kevin J Misner
Wei Tan
Hong Lou
Bert Gold
David W Wells
Hector C Bravo
Karin M Fredrikson
Timothy T Harkins
Patrice Milos
Berton Zbar
W Marston Linehan
Meredith Yeager
Thorkell Andresson
Michael Dean
G Steven Bova
National Cancer Institute · USNational Institutes of Health · USRoche (Switzerland) · CHHelicos Biosciences (United States) · USTampere University · FIUniversity of Maryland, College Park · US

Funding

LICI Microbiome and Genetics CoreZICBC011237 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI OHUIGIN, COLM · 2009 to 2025
$28.3M
CANCER AND INFLAMMATION: FUNCTION AND THERAPYZIABC011301 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI DEAN, MICHAEL · 2010 to 2015
$4.1M
Modes of Prostate Ca Progression--role of p53 PathwayR01CA092234 · NCI · JOHNS HOPKINS UNIVERSITY · PI BOVA, GEORGE STEVEN · 2001 to 2005
$1.2M
Intramural NIH HHS Z99 CA999999NCI NIH HHS CA92234NCI NIH HHS R01 CA092234NCI NIH HHS Y99 CA999999PHS HHS HHSN26120080001E
6 · The paper itself

Abstract

Metastatic castration-resistant prostate cancer (mCRPC) is a lethal disease, and molecular markers that differentiate indolent from aggressive subtypes are needed. We sequenced the exomes of five metastatic tumors and healthy kidney tissue from an index case with mCRPC to identify lesions associated with disease progression and metastasis. An Ashkenazi Jewish (AJ) germline founder mutation, del185AG in BRCA1, was observed and AJ ancestry was confirmed. Sixty-two somatic variants altered proteins in tumors, including cancer-associated genes, TMPRSS2-ERG, PBRM1, and TET2. The majority (n = 53) of somatic variants were present in all metastases and only a subset (n = 31) was observed in the primary tumor. Integrating tumor next-generation sequencing and DNA copy number showed somatic loss of BRCA1 and TMPRSS2-ERG. We sequenced 19 genes with deleterious mutations in the index case in additional mCRPC samples and detected a frameshift, two somatic missense alterations, tumor loss of heterozygosity, and combinations of germline missense SNPs in TET2. In summary, genetic analysis of metastases from an index case permitted us to infer a chronology for the clonal spread of disease based on sequential accrual of somatic lesions. The role of TET2 in mCRPC deserves additional analysis and may define a subset of metastatic disease.

Indexed as

Genes, BRCA1AgedAmino Acid SequenceDioxygenasesDNA-Binding ProteinsFrameshift MutationGerm-Line MutationHumansLoss of HeterozygosityMaleMiddle AgedMolecular Sequence DataMutation, MissenseNeoplasm MetastasisNuclear ProteinsOncogene Proteins, FusionDioxygenasesDNA-Binding ProteinsNuclear ProteinsOncogene Proteins, FusionPBRM1 protein, humanProto-Oncogene ProteinsTET2 protein, humanTMPRSS2-ERG fusion protein, humanTranscription FactorsBRCA1epigenetic modifiersERGmetastasisPBRM1somatic mutationTET2TMPRSS2tumor heterogeneity

Identifiers

PMID23636849
PMCPMC3745530
OpenAlexW2120411240

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.