Evidence map›Paper›PMID 23635090›Full record

ArticleEvoDevo2013

Hox gene expression during postlarval development of the polychaete Alitta virens.

Nadezhda I Bakalenko, Elena L Novikova, Alexander Y Nesterenko, Milana A Kulakova

Open access · goldAbstract read
In one paragraph

Article in EvoDevo, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. There and Back Again: Hox Clusters Use Both DNA Strands.Journal of developmental biology · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. EvoDevo · 2019
    Article
  13. Article
  14. Regeneration mechanisms in Syllidae (Annelida).Regeneration (Oxford, England) · 2018
    Review
  15. Development of the nervous system inFrontiers in zoology · 2017
    Article
  16. Hox and ParaHox gene expression in early body plan patterning of polyplacophoran mollusks.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2016
    Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Nadezhda I Bakalenko *Department of Embryology, Laboratory of Experimental Embryology, SaintPetersburg State University, Oranienbaumskoe sh., 2. St. Peterhof, Saint Petersburg, Russia.
Elena L Novikova *Department of Embryology, Laboratory of Experimental Embryology, SaintPetersburg State University, Oranienbaumskoe sh., 2. St. Peterhof, Saint Petersburg, Russia.
Alexander Y NesterenkoDepartment of Embryology, Laboratory of Experimental Embryology, SaintPetersburg State University, Oranienbaumskoe sh., 2. St. Peterhof, Saint Petersburg, Russia.
Milana A KulakovaDepartment of Embryology, Laboratory of Experimental Embryology, SaintPetersburg State University, Oranienbaumskoe sh., 2. St. Peterhof, Saint Petersburg, Russia.
St Petersburg University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHox genes are the family of transcription factors that play a key role in the patterning of the anterior-posterior axis of all bilaterian animals. These genes display clustered organization and colinear expression. Expression boundaries of individual Hox genes usually correspond with morphological boundaries of the body. Previously, we studied Hox gene expression during larval development of the polychaete Alitta virens (formerly Nereis virens) and discovered that Hox genes are expressed in nereid larva according to the spatial colinearity principle. Adult Alitta virens consist of multiple morphologically similar segments, which are formed sequentially in the growth zone. Since the worm grows for most of its life, postlarval segments constantly change their position along the anterior-posterior axis.

resultsWe studied the expression dynamics of the Hox cluster during postlarval development of the nereid Alitta virens and found that 8 out of 11 Hox genes are transcribed as wide gene-specific gradients in the ventral nerve cord, ectoderm, and mesoderm. The expression domains constantly shift in accordance with the changing proportions of the growing worm, so expression domains of most Hox genes do not have stable anterior or/and posterior boundaries.In the course of our study, we revealed long antisense RNA (asRNA) for some Hox genes. Expression patterns of two of these genes were analyzed using whole-mount in-situ hybridization. This is the first discovery of antisense RNA for Hox genes in Lophotrochozoa.

conclusionHox gene expression in juvenile A. virens differs significantly from Hox gene expression patterns both in A. virens larva and in other Bilateria.We suppose that the postlarval function of the Hox genes in this polychaete is to establish and maintain positional coordinates in a constantly growing body, as opposed to creating morphological difference between segments.

Identifiers

PMID23635090
PMCPMC3734159
OpenAlexW2168211673

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.