ArticleNucleic acids research2013
The Genomic HyperBrowser: an analysis web server for genome-scale data.
Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
24 citing papers in PubMed.
- ChIP-seq analysis found IL21R, a target gene of GTF2I-the susceptibility gene for primary biliary cholangitis in Chinese Han.Hepatology international · 2024Article
- Local euchromatin enrichment in lamina-associated domains anticipates their repositioning in the adipogenic lineage.Genome biology · 2022Article
- Long-range interactions between topologically associating domains shape the four-dimensional genome during differentiation.Nature genetics · 2019Article
- Enhort: a platform for deep analysis of genomic positions.PeerJ. Computer science · 2019Article
- Norwegian e-Infrastructure for Life Sciences (NeLS).F1000Research · 2018Review
- Ancestral perinatal obesogen exposure results in a transgenerational thrifty phenotype in mice.Nature communications · 2017Article
- Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1.Scientific reports · 2017Article
- GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome.GigaScience · 2017Article
- The rainfall plot: its motivation, characteristics and pitfalls.BMC bioinformatics · 2017Article
- ATRX binds to atypical chromatin domains at the 3' exons of zinc finger genes to preserve H3K9me3 enrichment.Epigenetics · 2016Article
- LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor.Bioinformatics (Oxford, England) · 2016Article
- Bioinformatics Analysis of Estrogen-Responsive Genes.Methods in molecular biology (Clifton, N.J.) · 2016Article
- Automated amplicon design suitable for analysis of DNA variants by melting techniques.BMC research notes · 2015Article
- Genome-wide study of correlations between genomic features and their relationship with the regulation of gene expression.DNA research : an international journal for rapid publication of reports on genes and genomes · 2015Article
- c-Myb Binding Sites in Haematopoietic Chromatin Landscapes.PloS one · 2015Article
- ClusTrack: feature extraction and similarity measures for clustering of genome-wide data sets.PloS one · 2015Article
- EBNA2 binds to genomic intervals associated with multiple sclerosis and overlaps with vitamin D receptor occupancy.PloS one · 2015Article
- Transcriptionally active regions are the preferred targets for chromosomal HPV integration in cervical carcinogenesis.PloS one · 2015Article
- Comprehensive analysis of DNA methylation data with RnBeads.Nature methods · 2014Article
- Interrogation of allelic chromatin states in human cells by high-density ChIP-genotyping.Epigenetics · 2014Article
Corrections and comments
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Authors and funding
21 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The immense increase in availability of genomic scale datasets, such as those provided by the ENCODE and Roadmap Epigenomics projects, presents unprecedented opportunities for individual researchers to pose novel falsifiable biological questions. With this opportunity, however, researchers are faced with the challenge of how to best analyze and interpret their genome-scale datasets. A powerful way of representing genome-scale data is as feature-specific coordinates relative to reference genome assemblies, i.e. as genomic tracks. The Genomic HyperBrowser (http://hyperbrowser.uio.no) is an open-ended web server for the analysis of genomic track data. Through the provision of several highly customizable components for processing and statistical analysis of genomic tracks, the HyperBrowser opens for a range of genomic investigations, related to, e.g., gene regulation, disease association or epigenetic modifications of the genome.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.