ArticleNucleic acids research2013
PlantGSEA: a gene set enrichment analysis toolkit for plant community.
Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 157 papers, 1 of them a synthesis that pooled it.
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157 citing papers in PubMed, 1 synthesis or guideline pooled it.
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- Simultaneous profiling of chromatin-associated RNA at targeted DNA loci and RNA-RNA Interactions through TaDRIM-seq.Nature communications · 2025Article
- The SUMO-conjugating enzyme OsSCE1a from wild rice regulates the functional stay-green trait in rice.Plant biotechnology journal · 2025Article
- A Novel Gene,International journal of molecular sciences · 2024Article
- Characterization and Transcriptomic Analysis of Sorghum EIN/EIL Family and Identification of Their Roles in Internode Maturation.Plants (Basel, Switzerland) · 2024Article
- A Quantitative Computational Framework for Allopolyploid Single-Cell Data Integration and Core Gene Ranking in Development.Molecular biology and evolution · 2024Article
- Transcriptome and Metabolome Analyses of Aroma Differences between Chardonnay and a Chardonnay Bud Sport.Molecules (Basel, Switzerland) · 2024Article
- Haplotype-resolved gapless genome and chromosome segment substitution lines facilitate gene identification in wild rice.Nature communications · 2024Article
- The chromosome-level genome and functional database accelerate research about biosynthesis of secondary metabolites in Rosa roxburghii.BMC plant biology · 2024Article
- Nuclear lamina component KAKU4 regulates chromatin states and transcriptional regulation in the Arabidopsis genome.BMC biology · 2024Article
- DhuFAP: a platform for gene functional analysis in Dendrobium huoshanense.BMC genomics · 2024Article
- KAKU4 regulates leaf senescence through modulation of H3K27me3 deposition in the Arabidopsis genome.BMC plant biology · 2024Article
- ASAP: a platform for gene functional analysis in Angelica sinensis.BMC genomics · 2024Article
- Physiological and Transcriptome Responses ofJournal of fungi (Basel, Switzerland) · 2024Article
- Systematic characterization of photoperiodic gene expression patterns reveals diverse seasonal transcriptional systems in Arabidopsis.PLoS biology · 2023Article
- ELONGATED HYPOCOTYL5 (HY5) and HY5 HOMOLOGUE (HYH) maintain shade avoidance suppression in UV-B.The Plant journal : for cell and molecular biology · 2023Article
- OsMADS17 simultaneously increases grain number and grain weight in rice.Nature communications · 2023Article
- GelFAP v2.0: an improved platform for Gene functional analysis in Gastrodia elata.BMC genomics · 2023Article
97 more citing papers are in PubMed but not listed here.
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3 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Gene Set Enrichment Analysis (GSEA) is a powerful method for interpreting biological meaning of a list of genes by computing the overlaps with various previously defined gene sets. As one of the most widely used annotations for defining gene sets, Gene Ontology (GO) system has been used in many enrichment analysis tools. EasyGO and agriGO, two GO enrichment analysis toolkits developed by our laboratory, have gained extensive usage and citations since their releases because of their effective performance and consistent maintenance. Responding to the increasing demands of more comprehensive analysis from the users, we developed a web server as an important component of our bioinformatics analysis toolkit, named PlantGSEA, which is based on GSEA method and mainly focuses on plant organisms. In PlantGSEA, 20 290 defined gene sets deriving from different resources were collected and used for GSEA analysis. The PlantGSEA currently supports gene locus IDs and Affymatrix microarray probe set IDs from four plant model species (Arabidopsis thaliana, Oryza sativa, Zea mays and Gossypium raimondii). The PlantGSEA is an efficient and user-friendly web server, and now it is publicly accessible at http://structuralbiology.cau.edu.cn/PlantGSEA.
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