Evidence map›Paper›PMID 23632014›Full record

ArticleThe Journal of biological chemistry2013

Large terminase conformational change induced by connector binding in bacteriophage T7.

María I Daudén, Jaime Martín-Benito, Juan C Sánchez-Ferrero, Mar Pulido-Cid, José M Valpuesta, José L Carrascosa

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In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Observation of Bacteriophage Ultrastructure by Cryo-Electron Microscopy.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  5. Viral Genomic DNA Packaging Machinery.Sub-cellular biochemistry · 2024
    Review
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  8. Review
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  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

María I DaudénDepartment of Macromolecular Structure, 28049 Madrid, Spain.
Jaime Martín-BenitoDepartment of Macromolecular Structure, 28049 Madrid, Spain.
Juan C Sánchez-FerreroComputational Systems Biology Group, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, 28049 Madrid, Spain.
Mar Pulido-CidDepartment of Macromolecular Structure, 28049 Madrid, Spain.
José M ValpuestaDepartment of Macromolecular Structure, 28049 Madrid, Spain.
José L CarrascosaDepartment of Macromolecular Structure, 28049 Madrid, Spain. Electronic address: jlcarras@cnb.csic.es.
Consejo Superior de Investigaciones Científicas · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During bacteriophage morphogenesis DNA is translocated into a preformed prohead by the complex formed by the portal protein, or connector, plus the terminase, which are located at an especial prohead vertex. The terminase is a powerful motor that converts ATP hydrolysis into mechanical movement of the DNA. Here, we have determined the structure of the T7 large terminase by electron microscopy. The five terminase subunits assemble in a toroid that encloses a channel wide enough to accommodate dsDNA. The structure of the complete connector-terminase complex is also reported, revealing the coupling between the terminase and the connector forming a continuous channel. The structure of the terminase assembled into the complex showed a different conformation when compared with the isolated terminase pentamer. To understand in molecular terms the terminase morphological change, we generated the terminase atomic model based on the crystallographic structure of its phage T4 counterpart. The docking of the threaded model in both terminase conformations showed that the transition between the two states can be achieved by rigid body subunit rotation in the pentameric assembly. The existence of two terminase conformations and its possible relation to the sequential DNA translocation may shed light into the molecular bases of the packaging mechanism of bacteriophage T7.

Indexed as

Molecular Docking SimulationBacteriophage T7DNA, ViralEndodeoxyribonucleasesEscherichia coliProtein Structure, QuaternaryViral ProteinsVirus AssemblyDNA, ViralEndodeoxyribonucleasesterminaseViral ProteinsATPasesBacteriophageDNA PackagingDNA TranslocationElectron Microscopy (EM)Protein ConformationSingle Particle ReconstructionTerminaseVirus Assembly

Identifiers

PMID23632014
PMCPMC3675631
OpenAlexW2033795954

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.