Evidence map›Paper›PMID 23631859›Full record

ArticleBiochimica et biophysica acta2013

Starvation actively inhibits splicing of glucose-6-phosphate dehydrogenase mRNA via a bifunctional ESE/ESS element bound by hnRNP K.

T J Cyphert, A L Suchanek, B N Griffith, L M Salati

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Oncogenic SRSF3 in health and diseases.International journal of biological sciences · 2023
    Review
  4. Article
  5. Intersections of post-transcriptional gene regulatory mechanisms with intermediary metabolism.Biochimica et biophysica acta. Gene regulatory mechanisms · 2017
    Review
  6. Article
  7. Differential Impacts of Alternative Splicing Networks on Apoptosis.International journal of molecular sciences · 2016
    Review
  8. Impacts of Alternative Splicing Events on the Differentiation of Adipocytes.International journal of molecular sciences · 2015
    Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

T J CyphertDepartment of Biochemistry, West Virginia University, Morgantown, WV 26506, USA.
A L Suchanek
B N Griffith
L M Salati
West Virginia University · US

Funding

WVU &MU NEW FACULTY GRANTSP20RR016477 · NCRR · MARSHALL UNIVERSITY · PI RANKIN, GARY O · 2001 to 2011
$35.5M
REGULATION OF GENE EXPRESSION BY DIETARY FATR01DK046897 · NIDDK · WEST VIRGINIA UNIVERSITY · PI SALATI, LISA M · 1999 to 2012
$2.8M
Regulation of Gene Expression by Dietary FatR56DK046897 · NIDDK · WEST VIRGINIA UNIVERSITY · PI SALATI, LISA M · 2008 to 2008
$273k
REGULATION OF GENE EXPRESSION BY DIETARY FATR29DK046897 · NIDDK · WEST VIRGINIA UNIVERSITY · PI SALATI, LISA M · 1993 to 1997
–
NCRR NIH HHS 2P20RR016477-13NCRR NIH HHS P20 RR016477NIDDK NIH HHS DK46897NIDDK NIH HHS R01 DK046897NIDDK NIH HHS R56 DK046897
6 · The paper itself

Abstract

Regulated expression of glucose-6-phosphate dehydrogenase (G6PD) is due to changes in the rate of pre-mRNA splicing and not changes in its transcription. Starvation alters pre-mRNA splicing by decreasing the rate of intron removal, leading to intron retention and a decrease in the accumulation of mature mRNA. A regulatory element within exon 12 of G6PD pre-mRNA controls splicing efficiency. Starvation caused an increase in the expression of heterogeneous nuclear ribonucleoprotein (hnRNP) K protein and this increase coincided with the increase in the binding of hnRNP K to the regulatory element and a decrease in the expression of G6PD mRNA. HnRNP K bound to two C-rich motifs forming an ESS within exon 12. Overexpression of hnRNP K decreased the splicing and expression of G6PD mRNA, while siRNA-mediated depletion of hnRNP K caused an increase in the splicing and expression of G6PD mRNA. Binding of hnRNP K to the regulatory element was enhanced in vivo by starvation coinciding with a decrease in G6PD mRNA. HnRNP K binding to the C-rich motifs blocked binding of serine-arginine rich, splicing factor 3 (SRSF3), a splicing enhancer. Thus hnRNP K is a nutrient regulated splicing factor responsible for the inhibition of the splicing of G6PD during starvation.

Indexed as

RNA SplicingStarvationAnimalsExonsGlucosephosphate DehydrogenaseHep G2 CellsHeterogeneous-Nuclear Ribonucleoprotein KHumansIntronsRNA, MessengerRNA, Small InterferingGlucosephosphate DehydrogenaseHeterogeneous-Nuclear Ribonucleoprotein KRNA, MessengerRNA, Small InterferinghnRNP KLivermRNA splicingNutrient regulationSRSF3

Identifiers

PMID23631859
PMCPMC3714377
OpenAlexW2000044375

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.