Evidence map›Paper›PMID 23630960›Full record

ArticleInfection and immunity2013

Mapping and regulation of genes within Salmonella pathogenicity island 12 that contribute to in vivo fitness of Salmonella enterica Serovar Typhimurium.

Ana M Tomljenovic-Berube, Brandyn Henriksbo, Steffen Porwollik, Colin A Cooper, Brian R Tuinema, Michael McClelland, Brian K Coombes

Abstract read
In one paragraph

Article in Infection and immunity, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Genetic and Phenotypic Characterization of aAntibiotics (Basel, Switzerland) · 2026
    Article
  2. Observational
  3. Infection biology ofEcoSal Plus · 2024
    Review
  4. Article
  5. Article
  6. Tropical medicine and infectious disease · 2023
    Review
  7. Review
  8. Article
  9. Article
  10. Microorganisms · 2020
    Review
  11. Review
  12. Article
  13. Review
  14. Evolution ofFrontiers in cellular and infection microbiology · 2017
    Review
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ana M Tomljenovic-BerubeMichael G DeGroote Institute for Infectious Disease Research, Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario, Canada.
Brandyn Henriksbo
Steffen Porwollik
Colin A Cooper
Brian R Tuinema
Michael McClelland
Brian K Coombes

Funding

NITRIC OXIDE CYTOTOXICITY IN SALMONELLOSISR01AI039557 · NIAID · UNIVERSITY OF WASHINGTON · PI FANG, FERRIC C · 1997 to 2012
$4.1M
Comparative Genomics in the EnterobateriaceaeR01AI052237 · NIAID · WASHINGTON UNIVERSITY · PI WEINSTOCK, GEORGE M · 2002 to 2009
$4.1M
Salmonella polymicrobial interactionsR01AI073971 · NIAID · OHIO STATE UNIVERSITY · PI AHMER, BRIAN M · 2008 to 2012
$2.8M
Identification of Salmonella Genes Important for Systemic ColonizationR01AI083646 · NIAID · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI ANDREWS-POLYMENIS, HELENE L · 2009 to 2012
$1.6M
Salmonella Genes Associated with Colonization of Specific HostsR01AI075093 · NIAID · VACCINE RESEARCH INSTITUTE OF SAN DIEGO · PI MCCLELLAND, MICHAEL · 2009 to 2010
$928k
Identification of Salmonella Genes Involved in Persistence in the Murine IntestinR56AI077645 · NIAID · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI ANDREWS-POLYMENIS, HELENE L · 2009 to 2009
$423k
MECHANISMS OF NITRIC OXIDE CYTOTOXICITY IN SALMONELLOSISR21AI039557 · NIAID · UNIVERSITY OF COLORADO DENVER · PI FANG, FERRIC C · 1996 to 1996
–
CIHR MOP 82704NIAID NIH HHS AI039557NIAID NIH HHS AI052237NIAID NIH HHS AI073971NIAID NIH HHS AI075093NIAID NIH HHS AI077645NIAID NIH HHS AI083646NIAID NIH HHS R01 AI039557NIAID NIH HHS R01 AI052237NIAID NIH HHS R01 AI073971NIAID NIH HHS R01 AI075093NIAID NIH HHS R01 AI083646NIAID NIH HHS R56 AI077645
6 · The paper itself

Abstract

Salmonella pathogenicity island 12 (SPI-12) of Salmonella enterica serovar Typhimurium is a 15-kb region that encompasses genes STM2230 to STM2245 and encodes a remnant phage known to contribute to bacterial virulence. In mouse infection experiments and replication assays in macrophages, we demonstrated a role for four genes in SPI-12 for bacterial survival in the host. STM2239, a potential Q antiterminator, showed a prominent contribution to bacterial fitness. Transcriptional reporter experiments, quantitative reverse transcription-PCR (RT-PCR), and immunoblotting demonstrated that the virulence regulator SsrB and STM2239 contribute to transcriptional activation of genes in SPI-12. SsrB was found to indirectly regulate this locus by transcriptional read-through from the sspH2 (STM2241) promoter. Chromatin immunoprecipitation showed that STM2239 copurified with the promoter regulating STM2237, suggesting that STM2239 may function as an antiterminator to activate adjacent genes. These results demonstrate that bacteriophage genes may be adapted by pathogenic bacteria to improve fitness in the host.

Indexed as

Gene Expression Regulation, BacterialGenomic IslandsAnimalsBacterial ProteinsBacteriophagesCell LineChromatin ImmunoprecipitationChromosome MappingFemaleGenes, BacterialGenes, ReporterGenes, ViralGenetic LociMacrophagesMiceMice, Inbred C57BLBacterial ProteinsSsrB protein, Salmonella typhimuriumTranscription Factors

Identifiers

PMID23630960
PMCPMC3697593

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.