Evidence map›Paper›PMID 23630617›Full record

ArticlePloS one2013

Preferential biological processes in the human limbus by differential gene profiling.

Martin N Nakatsu, Lily Vartanyan, Daniel M Vu, Madelena Y Ng, Xinmin Li, Sophie X Deng

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
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  8. Dry eye disease in mice activates adaptive corneal epithelial regeneration distinct from constitutive renewal in homeostasis.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Review
  10. Regulation of Limbal Epithelial Stem Cells: Importance of the Niche.International journal of molecular sciences · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Martin N NakatsuCornea Division, Jules Stein Eye Institute, University of California Los Angeles, Los Angeles, California, United States of America.
Lily Vartanyan
Daniel M Vu
Madelena Y Ng
Xinmin Li
Sophie X Deng
Doheny Eye Institute · USUniversity of California, Los Angeles · US

Funding

Vision Research Core at UCLAP30EY000331 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Gregory Darin Field, DAVID S WILLIAMS · 1985 to 2026
$16.8M
Vision Science Training ProgramT32EY007026 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Alapakkam P Sampath · 1985 to 2026
$5.7M
Ex Vivo Expansion of Human Limbal Stem Cells for TransplantationR01EY021797 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Sophie Deng · 2012 to 2026
$5.1M
NEI NIH HHS 1R01EY021797-01A1NEI NIH HHS 5P30EY000331-45NEI NIH HHS 5T32EY007026-35NEI NIH HHS P30 EY000331NEI NIH HHS R01 EY021797NEI NIH HHS T32 EY007026
6 · The paper itself

Abstract

Corneal epithelial stem cells or limbal stem cells (LSCs) are responsible for the maintenance of the corneal epithelium in humans. The exact location of LSCs is still under debate, but the increasing need for identifying the biological processes in the limbus, where LSCs are located, is of great importance in the regulation of LSCs. In our current study we identified 146 preferentially expressed genes in the human limbus in direct comparison to that in the cornea and conjunctiva. The expression of newly identified limbal transcripts endomucin, fibromodulin, paired-like homeodomain 2 (PITX2) and axin-2 were validated using qRT-PCR. Further protein analysis on the newly identified limbal transcripts showed protein localization of PITX2 in the basal and suprabasal layer of the limbal epithelium and very low expression in the cornea and conjunctiva. Two other limbal transcripts, frizzled-7 and tenascin-C, were expressed in the basal epithelial layer of the limbus. Gene ontology and network analysis of the overexpressed limbal genes revealed cell-cell adhesion, Wnt and TGF-β/BMP signaling components among other developmental processes in the limbus. These results could aid in a better understanding of the regulatory elements in the LSC microenvironment.

Indexed as

TranscriptomeAdultAdult Stem CellsAgedBone Morphogenetic ProteinsConjunctivaCorneaExtracellular Matrix ProteinsFibromodulinFrizzled ReceptorsGene Expression ProfilingGene Expression RegulationGene Regulatory NetworksHomeobox Protein PITX2Homeodomain ProteinsHumansBone Morphogenetic ProteinsEMCN protein, humanExtracellular Matrix ProteinsFibromodulinFMOD protein, humanFrizzled ReceptorsFZD7 protein, humanHomeobox Protein PITX2Homeodomain ProteinsProteoglycansSialoglycoproteinsTenascinTranscription FactorsTransforming Growth Factor beta

Identifiers

PMID23630617
PMCPMC3632514
OpenAlexW2069786001

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.