Evidence map›Paper›PMID 23630076›Full record

ArticleGenes & development2013

Survival factor NFIL3 restricts FOXO-induced gene expression in cancer.

Megan Keniry, Maira M Pires, Sarah Mense, Celine Lefebvre, Boyi Gan, Karen Justiano, Ying-Ka Ingar Lau, Ben Hopkins, Cindy Hodakoski, Susan Koujak and 7 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. A new border for circadian rhythm gene NFIL3 in diverse fields of cancer.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2023
    Review
  12. Article
  13. Article
  14. The multiple functions of PrPJournal of molecular medicine (Berlin, Germany) · 2022
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. The PI3K pathway impacts stem gene expression in a set of glioblastoma cell lines.Journal of cancer research and clinical oncology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 1 country.

Megan KeniryInstitute for Cancer Genetics, Columbia University, New York, New York 10032, USA.
Maira M Pires
Sarah Mense
Celine Lefebvre
Boyi Gan
Karen Justiano
Ying-Ka Ingar Lau
Ben Hopkins
Cindy Hodakoski
Susan Koujak
Joseph Toole
Franklyn Fenton
Ashley Calahan
Andrea Califano
Ronald A DePinho
Matt Maurer
Ramon Parsons
Columbia University Irving Medical Center · USCancer Genetics (United States) · USIcahn School of Medicine at Mount Sinai · USColumbia University · USRadiation Oncology Associates · USThe University of Texas MD Anderson Cancer Center · US

Funding

The role of PTEN in basal-like breast cancerP01CA097403 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BAER, RICHARD J · 2003 to 2013
$18.2M
TRAINING IN CELLULAR, MOLECULAR AND BIOPHYSICAL STUDIEST32GM008224 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI LIEM, RONALD K. · 1987 to 2021
$9.9M
PTEN TUMOR SUPPRESSOR AND SIGNAL TRANSDUCTIONR01CA082783 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI PARSONS, RAMON E · 2001 to 2016
$3.8M
Mutual Regulation of PTEN and P-REX2a in Normal and Cancer CellsR01CA155117 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI PARSONS, RAMON E · 2011 to 2017
$2.5M
NCI NIH HHS CA082783NCI NIH HHS CA97403NCI NIH HHS P01 CA097403NCI NIH HHS R01 CA082783NCI NIH HHS R01 CA155117NIGMS NIH HHS T32 GM008224
6 · The paper itself

Abstract

Depending on the circumstance, FOXO (Forkhead O) (FOXO1, FOXO3, and FOXO4) transcription factors activate the expression of markedly different sets of genes to produce different phenotypic effects. For example, distinct FOXO-regulated transcriptional programs stimulate cell death or enhance organism life span. To gain insight into how FOXOs select specific genes for regulation, we performed a screen for genes that modify FOXO activation of TRAIL, a death receptor ligand capable of inducing extrinsic apoptosis. We discovered that the bZIP transcriptional repressor NFIL3 (nuclear factor interleukin 3-regulated) hindered FOXO transcription factor access to chromatin at the TRAIL promoter by binding to nearby DNA and recruiting histone deacetylase-2 (HDAC2) to reduce histone acetylation. In the same manner, NFIL3 repressed expression of certain FOXO targets--e.g., FAS, GADD45α (growth arrest and DNA damage-inducible, α), and GADD45β--but not others. NFIL3, which we found to be overexpressed in different cancers, supported tumor cell survival largely through repression of TRAIL and antagonized hydrogen peroxide-induced cell death. Moreover, its expression in cancer was associated with lower patient survival. Therefore, NFIL3 alters cancer cell behavior and FOXO function by acting on chromatin to restrict the menu of FOXO target genes. Targeting of NFIL3 could be of therapeutic benefit for cancer patients.

Indexed as

Gene Expression Regulation, NeoplasticApoptosisBasic-Leucine Zipper Transcription FactorsBinding SitesBreast NeoplasmsCell Line, TumorChromatinForkhead Box Protein O1Forkhead Transcription FactorsHEK293 CellsHistone DeacetylasesHumansKaplan-Meier EstimatePrognosisPromoter Regions, GeneticProtein BindingBasic-Leucine Zipper Transcription FactorsChromatinForkhead Box Protein O1Forkhead Transcription FactorsFOXO1 protein, humanHistone DeacetylasesNFIL3 protein, humanRNA, Small InterferingTNF-Related Apoptosis-Inducing LigandTNFSF10 protein, human

Identifiers

PMID23630076
PMCPMC3650228
OpenAlexW2110681969

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.