Evidence map›Paper›PMID 23629964›Full record

ArticleThe Journal of cell biology2013

The level of origin firing inversely affects the rate of replication fork progression.

Yuan Zhong, Tittu Nellimoottil, Jared M Peace, Simon R V Knott, Sandra K Villwock, Janis M Yee, Jeffrey M Jancuska, Sanket Rege, Marianne Tecklenburg, Robert A Sclafani and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 121 citations in OpenAlex.

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  7. CRL4Nature communications · 2025
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17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Yuan ZhongMolecular and Computational Biology Program, University of Southern California, Los Angeles, CA 90089, USA.
Tittu Nellimoottil
Jared M Peace
Simon R V Knott
Sandra K Villwock
Janis M Yee
Jeffrey M Jancuska
Sanket Rege
Marianne Tecklenburg
Robert A Sclafani
Simon Tavaré
Oscar M Aparicio
University of Southern California · USUniversity of Colorado Denver · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Implications of haplotype structure in the human genomeP50HG002790 · NHGRI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TAVARE, SIMON · 2003 to 2013
$29.9M
Regulation of Chromosomal DNA Replication Dynamics in S. CerevisiaeR01GM065494 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI APARICIO, OSCAR M · 2003 to 2022
$6.9M
GENETIC &MOLECULAR ANALYSIS OF YEAST DNA REPLICATIONR01GM035078 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI SCLAFANI, ROBERT A · 1985 to 2012
$3.4M
NCI NIH HHS P30 CA046934NHGRI NIH HHS P50 HG002790NHGRI NIH HHS P50-HG002790NIGMS NIH HHS 3R01-GM065494-S1NIGMS NIH HHS 5R01-GM035078-22NIGMS NIH HHS 5R01-GM065494NIGMS NIH HHS R01 GM035078NIGMS NIH HHS R01 GM065494
6 · The paper itself

Abstract

DNA damage slows DNA synthesis at replication forks; however, the mechanisms remain unclear. Cdc7 kinase is required for replication origin activation, is a target of the intra-S checkpoint, and is implicated in the response to replication fork stress. Remarkably, we found that replication forks proceed more rapidly in cells lacking Cdc7 function than in wild-type cells. We traced this effect to reduced origin firing, which results in fewer replication forks and a consequent decrease in Rad53 checkpoint signaling. Depletion of Orc1, which acts in origin firing differently than Cdc7, had similar effects as Cdc7 depletion, consistent with decreased origin firing being the source of these defects. In contrast, mec1-100 cells, which initiate excess origins and also are deficient in checkpoint activation, showed slower fork progression, suggesting the number of active forks influences their rate, perhaps as a result of competition for limiting factors.

Indexed as

DNA ReplicationReplication OriginCell Cycle CheckpointsCell Cycle ProteinsCheckpoint Kinase 2DNA DamageDNA, FungalOrigin Recognition ComplexProtein Serine-Threonine KinasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCDC7 protein, S cerevisiaeCell Cycle ProteinsCheckpoint Kinase 2DNA, FungalORC1 protein, S cerevisiaeOrigin Recognition ComplexProtein Serine-Threonine KinasesRAD53 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID23629964
PMCPMC3639389
OpenAlexW1988157442

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.