Evidence map›Paper›PMID 23629934›Full record

ArticleThe American journal of tropical medicine and hygiene2013

Genetic and shared environmental influences on interferon-γ production in response to Mycobacterium tuberculosis antigens in a Ugandan population.

Li Tao, Sarah Zalwango, Keith Chervenak, Bonnie Thiel, Lashaunda L Malone, Feiyou Qiu, Harriet Mayanja-Kizza, W Henry Boom, Catherine M Stein, Tuberculosis Research Unit (TBRU)

Open access · bronzeAbstract read
In one paragraph

Article in The American journal of tropical medicine and hygiene, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Genetic Resistance toFrontiers in immunology · 2018
    Review
  10. Article
  11. Human Genomics ofCurrent genetic medicine reports · 2017
    Article
  12. Observational
  13. Article
  14. Article
  15. Human genetics of tuberculosis: a long and winding road.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2014
    Review
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Li TaoDepartment of Medicine, Case Western Reserve University, Cleveland, OH, USA. li.tao@case.edu
Sarah Zalwango
Keith Chervenak
Bonnie Thiel
Lashaunda L Malone
Feiyou Qiu
Harriet Mayanja-Kizza
W Henry Boom
Catherine M Stein
Tuberculosis Research Unit (TBRU)
Ministry of Health · UGCase Western Reserve University · US

Funding

X-LINKED EXTENSION OF THE REVISED HASEMAN-ELSTON ALGORITHM FOR LINKAGE ANALYSISP41RR003655 · NCRR · LOUISIANA STATE UNIV HSC NEW ORLEANS · PI ELSTON, ROBERT C. · 1987 to 2011
$11.5M
Clinical and Translational Science Collaborative of ClevelandKL2TR000440 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI KONSTAN, MICHAEL W. · 2012 to 2016
$11.1M
Case Western Reserve University/Cleveland Clinic CTSA (KL2)KL2RR024990 · NCRR · CASE WESTERN RESERVE UNIVERSITY · PI DAVIS, PAMELA B · 2007 to 2011
$9.5M
Tuberculosis Prevention Research Unit /TBRU/-266095383N01AI095383 · NIAID · CASE WESTERN RESERVE UNIVERSITY · 2000 to 2005
$5.6M
Proteogenomics of dysregulated protein interaction networks in MTB infectionR01HL106798 · NHLBI · CASE WESTERN RESERVE UNIVERSITY · PI BOOM, W. HENRY, CHANCE, MARK R · 2010 to 2013
$2.8M
Pathway analysis of tuberculosis pathogenesisR01HL096811 · NHLBI · CASE WESTERN RESERVE UNIVERSITY · PI STEIN, CATHERINE MARIE · 2009 to 2013
$2.2M
Case Western Reserve University/Cleveland Clinic CTSA (TL1)TL1RR024991 · NCRR · CASE WESTERN RESERVE UNIVERSITY · PI DAVIS, PAMELA B · 2007 to 2011
$2.1M
NCATS NIH HHS KL2 TR000440NCRR NIH HHS 5TL1RR024991-04NCRR NIH HHS KL2 RR024990NCRR NIH HHS KL2RR024990NCRR NIH HHS P41 RR003655NCRR NIH HHS TL1 RR024991NHLBI NIH HHS R01 HL096811NHLBI NIH HHS R01HL096811NHLBI NIH HHS R01 HL106798NIAID NIH HHS HHSN266200700022C/N01-AI70022NIAID NIH HHS N01 AI070022NIAID NIH HHS N01 AI095383NIAID NIH HHS N01-AI95383
6 · The paper itself

Abstract

Interferon-γ (IFN-γ) is a key cytokine in the immune response to Mycobacterium tuberculosis (Mtb). Many studies established IFN-γ responses are influenced by host genetics, however differed widely by the study design and heritability estimation method. We estimated heritability of IFN-γ responses to Mtb culture filtrate (CF), ESAT-6, and Antigen 85B (Ag85B) in 1,104 Ugandans from a household contact study. Our method separately evaluates shared environmental and genetic variance, therefore heritability estimates were not upwardly biased, ranging from 11.6% for Ag85B to 22.9% for CF. Subset analyses of individuals with latent Mtb infection or without human immunodeficiency virus infection yielded higher heritability estimates, suggesting 10-30% of variation in IFN-γ is caused by a shared environment. Immunosuppression does not negate the role of genetics on IFN-γ response. These estimates are remarkably close to those reported for components of the innate immune response. These findings have implications for the interpretation of IFN-γ response assays and vaccine studies.

Indexed as

AcyltransferasesAdolescentAntigens, BacterialBacterial ProteinsChildChild, PreschoolEnzyme-Linked Immunosorbent AssayFemaleHumansImmunityInfantInterferon-gammaMaleTuberculosis, PulmonaryUgandaAcyltransferasesantigen 85B, Mycobacterium tuberculosisAntigens, BacterialBacterial ProteinsESAT-6 protein, Mycobacterium tuberculosisInterferon-gamma

Identifiers

PMID23629934
PMCPMC3748477
OpenAlexW2109967215

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.