Evidence map›Paper›PMID 23629836›Full record

ArticlePlant physiology2013

Collapsed abnormal pollen1 gene encoding the Arabinokinase-like protein is involved in pollen development in rice.

Kenji Ueda, Fumiaki Yoshimura, Akio Miyao, Hirohiko Hirochika, Ken-Ichi Nonomura, Hiroetsu Wabiko

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Plants (Basel, Switzerland) · 2023
    Article
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  10. Hydroxyproline-Frontiers in plant science · 2022
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Metabolism of L-arabinose in plants.Journal of plant research · 2016
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Kenji UedaDepartment of Biological Production, Faculty of Bioresource Sciences, Akita Prefectural University, Akita 010-0195, Japan. uken@akita-pu.ac.jp
Fumiaki Yoshimura
Akio Miyao
Hirohiko Hirochika
Ken-Ichi Nonomura
Hiroetsu Wabiko
Akita Prefectural University · JPInstitute of Agrobiological Sciences · JPThe Graduate University for Advanced Studies, SOKENDAI · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We isolated a pollen-defective mutant, collapsed abnormal pollen1 (cap1), from Tos17 insertional mutant lines of rice (Oryza sativa). The cap1 heterozygous plant produced equal numbers of normal and collapsed abnormal grains. The abnormal pollen grains lacked almost all cytoplasmic materials, nuclei, and intine cell walls and did not germinate. Genetic analysis of crosses revealed that the cap1 mutation did not affect female reproduction or vegetative growth. CAP1 encodes a protein consisting of 996 amino acids that showed high similarity to Arabidopsis (Arabidopsis thaliana) l-arabinokinase, which catalyzes the conversion of l-arabinose to l-arabinose 1-phosphate. A wild-type genomic DNA segment containing CAP1 restored mutants to normal pollen grains. During rice pollen development, CAP1 was preferentially expressed in anthers at the bicellular pollen stage, and the effects of the cap1 mutation were mainly detected at this stage. Based on the metabolic pathway of l-arabinose, cap1 pollen phenotype may have been caused by toxic accumulation of l-arabinose or by inhibition of cell wall metabolism due to the lack of UDP-l-arabinose derived from l-arabinose 1-phosphate. The expression pattern of CAP1 was very similar to that of another Arabidopsis homolog that showed 71% amino acid identity with CAP1. Our results suggested that CAP1 and related genes are critical for pollen development in both monocotyledonous and dicotyledonous plants.

Indexed as

Amino Acid SequenceArabidopsis ProteinsArabinoseCloning, MolecularFlowersGene Expression Regulation, PlantGenetic Complementation TestMolecular Sequence DataMutationOryzaPhosphotransferases (Alcohol Group Acceptor)PhylogenyPlant ProteinsPlants, Genetically ModifiedPollenSequence Homology, Amino AcidARA1 protein, ArabidopsisArabidopsis ProteinsArabinosearabinose-1-phosphatePhosphotransferases (Alcohol Group Acceptor)Plant ProteinsSugar Phosphates

Identifiers

PMID23629836
PMCPMC3668075
OpenAlexW2152385027

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.