Evidence map›Paper›PMID 23628822›Full record

ArticleDiagnostic molecular pathology : the American journal of surgical pathology, part B2013

Xp11.2 translocation renal cell carcinoma with PSF-TFE3 rearrangement.

Minghao Zhong, Paul Weisman, Bing Zhu, Maria Brassesco, Youfeng Yang, W Marston Linehan, Maria J Merino, David Zhang, Stephen Rohan, Dongming Cai and 1 more

Open access · greenAbstract readCase Reports
In one paragraph

Article in Diagnostic molecular pathology : the American journal of surgical pathology, part B, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Minghao ZhongDepartment of Pathology, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA. minghaozhong@gmail.com
Paul Weisman
Bing Zhu
Maria Brassesco
Youfeng Yang
W Marston Linehan
Maria J Merino
David Zhang
Stephen Rohan
Dongming Cai
Ximing Yang
Northwestern University · USIcahn School of Medicine at Mount Sinai · USCenter for Cancer Research · USUniversidade de São Paulo · BR

Funding

Molecular Therapeutics of Kidney Cancer: MET Gene and BHD GeneZIABC011043 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI LINEHAN, WILLIAM MARSTON · 2009 to 2025
$20.9M
Clinical Studies of the Molecular Genetic Basis of Kidney CancerZIABC011028 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI LINEHAN, WILLIAM MARSTON · 2009 to 2025
$17.9M
Clinical Nursing and Data Management CoreZIDBC011089 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI LINEHAN, WILLIAM MARSTON · 2009 to 2025
$17.4M
Study of Hereditary Renal and Other Familial SyndromesZIABC010696 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MERINO, MARIA · 2009 to 2025
$4.5M
Translational Surgical PathologyZIESC000853 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI MERINO, MARIA · 2009 to 2025
$4.3M
microRNA Profiling in the Spectrum of Kidney TumorsZIABC011405 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MERINO, MARIA · 2011 to 2025
$2.9M
Study of Hereditary Renal SyndromesZ01BC010696 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MERINO NEUMANN, MARIA · 2005 to 2008
$697k
Identification of HIF-Regulated Oncogenic Mediators in Renal Cell CarcinomaZ01BC011095 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BOTTARO, DONALD · 2008 to 2008
$97k
Intramural NIH HHS Z01 BC010696Intramural NIH HHS Z01 BC011095
6 · The paper itself

Abstract

Xp11.2 translocation renal cell carcinoma (Xp11.2 RCC) is a subtype of RCC characterized by translocations involving a breakpoint at the TFE3 gene (Xp11.2). Moderate to strong nuclear TFE3 immunoreactivity has been recognized as a specific diagnostic marker for this type of tumor. However, exclusive cytoplasmic localization of a TFE3 fusion protein was reported in UOK 145 cells, a cell line derived from an Xp11.2 RCC harboring the PSF-TFE3 translocation. If reproducible using immunohistochemistry (IHC), this finding would have important implications for pathologists in the diagnosis of Xp11.2 RCC, calling into question the specificity of nuclear immunoreactivity for TFE3 in these tumors. The purpose of this study was to determine whether the above-noted cytoplasmic localization of the TFE3 fusion protein could be reproduced using IHC. UOK 145 cells and fresh frozen tissue from 2 clinical cases of Xp11.2 RCC found to harbor the PSF-TFE3 gene rearrangement (by cytogenetic testing) were collected. All samples were subjected to histopathologic evaluation by board-certified pathologists, TFE3 IHC, reverse transcription polymerase chain reaction, and Sanger sequencing analysis. A strong nuclear TFE3 immunoreactivity was demonstrated in all samples including the UOK 145 cell line. No cytoplasmic immunoreactivity was seen. Reverse transcription polymerase chain reaction and Sanger sequencing confirmed the previously reported PSF-TFE3 gene fusion between exon 9 of PSF and exon 6 of TFE3 in the UOK 145 cell line and in one of 2 clinical cases of Xp11.2 RCC. A novel PSF-TFE3 gene fusion between exon 9 of PSF and exon 5 of TFE3 was detected in the second clinical case of Xp11.2 RCC.

Indexed as

Gene Expression Regulation, NeoplasticGene RearrangementTranslocation, GeneticAdolescentAdultBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCarcinoma, Renal CellChromosomes, Human, XExonsFemaleHumansImmunohistochemistryMaleOncogene Proteins, FusionReverse Transcriptase Polymerase Chain ReactionBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsOncogene Proteins, FusionTFE3 protein, human

Identifiers

PMID23628822
PMCPMC7561258
OpenAlexW1978011364

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.