Evidence map›Paper›PMID 23626741›Full record

ArticlePloS one2013

Syntaxin 16 regulates lumen formation during epithelial morphogenesis.

Jae-Joon Jung, Shivangi M Inamdar, Ajit Tiwari, Ding Ye, Fang Lin, Amit Choudhury

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

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  8. Molecular mechanisms of de novo lumen formation.Nature reviews. Molecular cell biology · 2014
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jae-Joon JungDepartment of Anatomy and Cell Biology, University of Iowa, Iowa City, Iowa, United States of America.
Shivangi M Inamdar
Ajit Tiwari
Ding Ye
Fang Lin
Amit Choudhury
University of Iowa · US

Funding

Role of Syntaxin 6 Regulated Post-Golgi Trafficking in AngiogenesisR01HL089599 · NHLBI · UNIVERSITY OF IOWA · PI CHOUDHURY, AMIT · 2008 to 2012
$1.9M
NHLBI NIH HHS R01 HL089599NHLBI NIH HHS R01HL089599
6 · The paper itself

Abstract

The formation and maintenance of cell-cell junctions, both under physiological and pathological conditions, requires the targeting and trafficking of junctional proteins. Proteins of the syntaxin (Stx)-family localize to a variety of subcellular membranes and contribute to intracellular transport of cargo by regulating vesicle fusion events at these sites. Unlike plasma membrane localized Stxs, the roles of endosome- and Golgi-localized stx proteins in epithelial morphogenesis are less understood. Here we show that Stx16- an endosome- and Golgi-localized target-membrane soluble N-ethylmaleimide attachment protein receptor (t-SNARE) that plays a role in membrane trafficking between these compartments - is essential for lumen development. In cultured Madin Darby Canine Kidney (MDCK) cells, Stx16 was selectively upregulated as sparsely plated cells attained confluency. Stx16-depleted confluent monolayers consistently showed lower transepithelial resistance than control monolayers, and failed to maintain endogenous and ectopically expressed E-cadherin at the adherens junctions due to decreased recycling. We further found that whereas cysts formed by MDCK cells cultured in Matrigel have a single hollow lumen, those formed by stx16-depleted counterparts had multiple lumens, due to abnormal orientiation of the mitotic spindle. Finally, a similar role for stx16 function in vivo is indicated by our analysis of pronephric-duct development in zebrafish expressing the claudinB:lynGFP transgene; lack of stx16 function in this structure (in stx16-morphant embryos) led to the development of enlarged, torturous pronephric ducts with more than one lumen. Taken together, our in vitro and in vivo studies establish a role for Stx16 in maintaining the integrity of cell-cell junctions, and thereby in morphogenesis of the kidney epithelial lumen.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsCadherinsCell CountCell MembraneCollagenDogsDrug CombinationsEmbryo, NonmammalianEndosomesGolgi ApparatusIntercellular JunctionsKidneyLamininMadin Darby Canine Kidney CellsProtein TransportCadherinsCollagenDrug CombinationsLamininmatrigelProteoglycansSNARE ProteinsSyntaxin 16

Identifiers

PMID23626741
PMCPMC3633931
OpenAlexW2050297084

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.