Evidence map›Paper›PMID 23625921›Full record

ArticleThe Journal of biological chemistry2013

Epigenetic switching by the metabolism-sensing factors in the generation of orexin neurons from mouse embryonic stem cells.

Koji Hayakawa, Mitsuko Hirosawa, Yasuyuki Tabei, Daisuke Arai, Satoshi Tanaka, Noboru Murakami, Shintaro Yagi, Kunio Shiota

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 82 citations in OpenAlex.

  1. Narcolepsy is (not) an autoimmune disease.Nature reviews. Neurology · 2026
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  11. Role ofPhysiological reviews · 2021
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  12. Regulation of Nuclear Factor-kappaB Function byFrontiers in cell and developmental biology · 2021
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  16. Frontiers in genetics · 2020
    Review
  17. Article
  18. Molecular codes and in vitro generation of hypocretin and melanin concentrating hormone neurons.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  19. Article
  20. Involvement of PLAGL1/ZAC1 in hypocretin/orexin transcription.International journal of molecular medicine · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Koji HayakawaLaboratory of Cellular Biochemistry, Department of Animal Resource Sciences/Veterinary Medical Sciences, The University of Tokyo, Tokyo 113-8657, Japan.
Mitsuko Hirosawa
Yasuyuki Tabei
Daisuke Arai
Satoshi Tanaka
Noboru Murakami
Shintaro Yagi
Kunio Shiota
The University of Tokyo · JPUniversity of Miyazaki · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The orexin system plays a central role in the integration of sleep/wake and feeding behaviors in a broad spectrum of neural-metabolic physiology. Orexin-A and orexin-B are produced by the cleavage of prepro-orexin, which is encoded on the Hcrt gene. To date, methods for generating other peptide neurons could not induce orexin neurons from pluripotent stem cells. Considering that the metabolic status affects orexin expression, we supplemented the culture medium with a nutrient factor, ManNAc, and succeeded in generating functional orexin neurons from mouse ES cells. Because DNA methylation inhibitors and histone deacetylase inhibitors could induce Hcrt expression in mouse ES cells, the epigenetic mechanism may be involved in this orexin neurogenesis. DNA methylation analysis showed the presence of a tissue-dependent differentially methylated region (T-DMR) around the transcription start site of the Hcrt gene. In the orexin neurons induced by supplementation of ManNAc, the T-DMR of the Hcrt gene was hypomethylated in association with higher H3/H4 acetylation. Concomitantly, the histone acetyltransferases p300, CREB-binding protein (CBP), and Mgea5 (also called O-GlcNAcase) were localized to the T-DMR in the orexin neurons. In non-orexin-expressing cells, H3/H4 hypoacetylation and hyper-O-GlcNAc modification were observed at the T-DMRs occupied by O-GlcNAc transferase and Sirt1. Therefore, the results of the present study suggest that the glucose metabolite, ManNAc, induces switching from the inactive state by Ogt-Sirt1 to the active state by Mgea5, p300, and CBP at the Hcrt gene locus.

Indexed as

AcetylationAnimalsCell DifferentiationCytidineDeoxycytidineDNA-Cytosine MethylasesDNA MethylationEmbryonic Stem CellsEpigenesis, GeneticFemaleGlycosylationHexosaminesHistone Deacetylase InhibitorsHistonesHydroxamic AcidsIntracellular Signaling Peptides and ProteinsCytidineDeoxycytidineDNA-Cytosine MethylasesHexosaminesHistone Deacetylase InhibitorsHistonesHydroxamic AcidsIntracellular Signaling Peptides and ProteinsN-acetylmannosamineNeuropeptidesOrexinspyrimidin-2-one beta-ribofuranosideSirt1 protein, mouseSirtuin 1trichostatin ADNA MethylationEmbryonic Stem CellEpigeneticsHistone AcetylaseHistone AcetylationMgea5NeurogenesisO-GlcNAcylationOgtSirt1

Identifiers

PMID23625921
PMCPMC3682516
OpenAlexW2019077234

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.