Evidence map›Paper›PMID 23625215›Full record

ArticleJournal of microbiology (Seoul, Korea)2013

Prevalence of amino acid changes in the yvqF, vraSR, graSR, and tcaRAB genes from vancomycin intermediate resistant Staphylococcus aureus.

Jae Il Yoo, Jung Wook Kim, Gi Su Kang, Hwa Su Kim, Jung Sik Yoo, Yeong Seon Lee

Abstract read
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In one paragraph

Article in Journal of microbiology (Seoul, Korea), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
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  4. Genetic and Phenotypic Changes Related to the Development ofAntibiotics (Basel, Switzerland) · 2024
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  5. Teicoplanin associated geneFrontiers in microbiology · 2023
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  6. Article
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  8. Article
  9. Genome Sequence of a Highly VirulentCurrent genomics · 2020
    Article
  10. Vancomycin resistantJournal of advanced research · 2020
    Review
  11. The Staphylococcal Cell Wall.Microbiology spectrum · 2019
    Review
  12. Antibiotic Resistance and the MRSA Problem.Microbiology spectrum · 2019
    Review
  13. Article
  14. Article
  15. Vancomycin Resistance inThe Yale journal of biology and medicine · 2017
    Review
  16. Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jae Il YooDivision of Antimicrobial Resistance, Center for Infectious Diseases, Korea National Institute of Health, Osong 363-951, Republic of Korea.
Jung Wook Kim
Gi Su Kang
Hwa Su Kim
Jung Sik Yoo
Yeong Seon Lee
Korea National Institute of Health · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vancomycin intermediate Staphylococcus aureus (VISA) strains are increasingly prevalent in the hospital setting, and are of major concern in the treatment of methicillin-resistant S. aureus infections. Multiple mutations in vancomycin-susceptible S. aureus (VSSA) strains likely led to the emergence of VISA, and point mutations in the agr, orf1, yvqF, vraSR, graSR, and tcaRAB genes of VISA strains have been shown to contribute to glycopeptide resistance. Therefore, we investigated point mutations in these genes from 87 VISA and 27 VSSA clinical strains isolated from Korean hospitals. All strains were assigned an agr type (I, II, or III) on the basis of multiplex PCR, with the majority of VISA strains belonging to agr groups I and II. Sequencing revealed amino acid changes in vraS from VISA strains which were not present in the VSSA strains. The E59D substitution in the vraR gene occurred in 36.3% of VSSA/agrI and 92.7% of VISA/agrI strains, suggesting that this mutation associated with emergence of VISA/agrI strains. VISA strains were classified into 31 mutation patterns according to mutations in the yvqF, vraSR, graSR, and tcaRAB genes. In addition, the mutation patterns were correlated with agr and sequence type (ST). The most prevalent pattern included agr type I (ST 72) strains with E59D (vraR), L26F and T224I (graS), D148Q (graR), and L218P, R283H and G312D (tcaA) amino acid substitutions. The minimum inhibitory concentration (MIC) range of mutation pattern 5 toward oxacillin and imipenem was much lower than that of patterns 6 and 24. These results improve our understanding of emergence of VISA strains.

Indexed as

Amino Acid SubstitutionVancomycin ResistanceAnti-Bacterial AgentsBacterial ProteinsDNA-Binding ProteinsHumansMutation, MissensePoint MutationRepublic of KoreaStaphylococcal InfectionsStaphylococcus aureusVancomycinAnti-Bacterial AgentsBacterial ProteinsDNA-Binding ProteinsVancomycinVraR protein, Staphylococcus aureusVraS protein, Staphylococcus aureus

Identifiers

PMID23625215
OpenAlexW2001923195

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.