ArticleDatabase : the journal of biological databases and curation2013
The Protein Model Portal--a comprehensive resource for protein structure and model information.
Article in Database : the journal of biological databases and curation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 146 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
146 citing papers in PubMed, 282 citations in OpenAlex.
- Exploring the Antimicrobial Potential of a Novel Phage-Derived Lytic Protein AgainstCurrent issues in molecular biology · 2026Article
- Beyond Single Chains: Benchmarking Macromolecular Complex Prediction Methods With the Continuous Automated Model EvaluatiOn (CAMEO).Proteins · 2026Article
- Assisting and accelerating NMR assignment with restrained structure prediction.Communications biology · 2025Article
- Insights into Octopus maya cathepsins from metatranscriptome and genome: structure evolutionary relationships and functional role prediction in digestive processes.Biology open · 2025Article
- Protein structure prediction via deep learning: an in-depth review.Frontiers in pharmacology · 2025Review
- AI-Driven Deep Learning Techniques in Protein Structure Prediction.International journal of molecular sciences · 2024Review
- Prediction of protein secondary structure by the improved TCN-BiLSTM-MHA model with knowledge distillation.Scientific reports · 2024Article
- Article
- ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models.Journal of molecular biology · 2023Article
- Investigation of the Inhibition Mechanism of Xanthine Oxidoreductase by Oxipurinol: A Computational Study.Journal of chemical information and modeling · 2023Article
- Critical Assessment of Methods for Predicting the 3D Structure of Proteins and Protein Complexes.Annual review of biophysics · 2023Review
- Computational Characterization of the Inhibition Mechanism of Xanthine Oxidoreductase by Topiroxostat.ACS catalysis · 2023Article
- In Silico Investigations into the Selectivity of Psychoactive and New Psychoactive Substances in Monoamine Transporters.ACS omega · 2022Article
- Deep learning geometrical potential for high-accuracyiScience · 2022Article
- A Benchmark Dataset for Evaluating Practical Performance of Model Quality Assessment of Homology Models.Bioengineering (Basel, Switzerland) · 2022Article
- The AlphaFold Database of Protein Structures: A Biologist's Guide.Journal of molecular biology · 2022Review
- Secondary structure specific simpler prediction models for protein backbone angles.BMC bioinformatics · 2022Article
- Predicted 3D model of the M protein of Porcine Epidemic Diarrhea Virus and analysis of its immunogenic potential.PloS one · 2022Article
- New system for archiving integrative structures.Acta crystallographica. Section D, Structural biology · 2021Article
- COSMIC Cancer Gene Census 3D database: understanding the impacts of mutations on cancer targets.Briefings in bioinformatics · 2021Article
86 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
7 authors at 2 institutions in 1 country.
Funding
Abstract
The Protein Model Portal (PMP) has been developed to foster effective use of 3D molecular models in biomedical research by providing convenient and comprehensive access to structural information for proteins. Both experimental structures and theoretical models for a given protein can be searched simultaneously and analyzed for structural variability. By providing a comprehensive view on structural information, PMP offers the opportunity to apply consistent assessment and validation criteria to the complete set of structural models available for proteins. PMP is an open project so that new methods developed by the community can contribute to PMP, for example, new modeling servers for creating homology models and model quality estimation servers for model validation. The accuracy of participating modeling servers is continuously evaluated by the Continuous Automated Model EvaluatiOn (CAMEO) project. The PMP offers a unique interface to visualize structural coverage of a protein combining both theoretical models and experimental structures, allowing straightforward assessment of the model quality and hence their utility. The portal is updated regularly and actively developed to include latest methods in the field of computational structural biology. Database URL: http://www.proteinmodelportal.org.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.