Evidence map›Paper›PMID 23624406›Full record

ArticleNature cell biology2013

The Cdk1-APC/C cell cycle oscillator circuit functions as a time-delayed, ultrasensitive switch.

Qiong Yang, James E Ferrell

Open access · greenAbstract read
In one paragraph

Article in Nature cell biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 150 citations in OpenAlex.

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  8. Frontiers in cell and developmental biology · 2025
    Review
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28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Qiong YangDepartment of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, California 94305-5174, USA.
James E Ferrell
Stanford University · US

Funding

THE ROLE OF MAP KINASE IN THE CELL CYCLER01GM046383 · NIGMS · UNIVERSITY OF WISCONSIN MADISON · PI FERRELL, JAMES E. · 1991 to 2018
$7.3M
Howard Hughes Medical InstituteNIGMS NIH HHS GM046383NIGMS NIH HHS R01 GM046383
6 · The paper itself

Abstract

Despite the complexity and variety of biological oscillators, their core design invariably includes an essential negative feedback loop. In the Xenopus laevis embryonic cell cycle oscillator, this loop consists of the kinase cyclin B-Cdk1 and the ubiquitin ligase APC/C(Cdc20); active Cdk1 activates APC/C(Cdc20), which then brings about cyclin B degradation and inactivates Cdk1. Here we ask how this negative feedback loop functions quantitatively, with the aim of understanding what mechanisms keep the Cdk1-APC/C(Cdc20) system from settling into a stable steady state with intermediate levels of Cdk1 and APC/C(Cdc20) activity. We found that the system operates as a time-delayed, digital switch, with a time lag of ∼ 15 min between Cdk1 and APC/C(Cdc20) activation and a tremendously high degree of ultrasensitivity (n(H)≈17). Computational modelling shows how these attributes contribute to the generation of robust, clock-like oscillations. Principles uncovered here may also apply to other activator-repressor oscillators and help in designing robust synthetic clocks.

Indexed as

Cell CycleAnimalsCdc20 ProteinsCDC2 Protein KinaseCell Cycle ProteinsComputational BiologyComputer SimulationCyclin ACyclin B1Enzyme ActivationEnzyme AssaysFeedback, PhysiologicalModels, BiologicalOvumPhosphorylationProtein Interaction MappingCCNA2 protein, XenopusCdc20 ProteinsCdc20 protein, XenopusCDC2 Protein KinaseCell Cycle ProteinsCyclin ACyclin B1Protein-Tyrosine KinasesWEE1 protein, XenopusXenopus Proteins

Identifiers

PMID23624406
PMCPMC3728279
OpenAlexW2069881137

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.