Evidence map›Paper›PMID 23622249›Full record

ArticleCell2013

Punctuated evolution of prostate cancer genomes.

Sylvan C Baca, Davide Prandi, Michael S Lawrence, Juan Miguel Mosquera, Alessandro Romanel, Yotam Drier, Kyung Park, Naoki Kitabayashi, Theresa Y MacDonald, Mahmoud Ghandi and 33 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04015622 (A Randomized Phase II Trial Comparing Biomarker Directed Therapy Versus Clinician's Choice of Enzalutamide or Docetaxel in Patients With Advanced Prostate Cancer Post Abiraterone), which is not on this map. Cited by 770 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
770citing papers in PubMed, 2 pooled it
44.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04015622 phase2active not recruitingnot on this mapstarted 2020, after this paper: background citation

A Randomized Phase II Trial Comparing Biomarker Directed Therapy Versus Clinician's Choice of Enzalutamide or Docetaxel in Patients With Advanced Prostate Cancer Post Abiraterone

TypeinterventionalSponsorBritish Columbia Cancer AgencyRan2020 to 2026Enrolled100ConditionsMetastatic Castration-Resistant Prostate Cancer (mCRPC)ArmsEnzalutamide, Docetaxel
3 · Its place in the literature

Who cites it

770 citing papers in PubMed, 2 syntheses or guidelines pooled it, 1,341 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

710 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

43 authors at 8 institutions in 3 countries.

Sylvan C BacaHarvard Medical School, Boston, MA 02115, USA.
Davide Prandi
Michael S Lawrence
Juan Miguel Mosquera
Alessandro Romanel
Yotam Drier
Kyung Park
Naoki Kitabayashi
Theresa Y MacDonald
Mahmoud Ghandi
Eliezer Van Allen
Gregory V Kryukov
Andrea Sboner
Jean-Philippe Theurillat
T David Soong
Elizabeth Nickerson
Daniel Auclair
Ashutosh Tewari
Himisha Beltran
Robert C Onofrio
Gunther Boysen
Candace Guiducci
Christopher E Barbieri
Kristian Cibulskis
Andrey Sivachenko
Scott L Carter
Gordon Saksena
Douglas Voet
Alex H Ramos
Wendy Winckler
Michelle Cipicchio
Kristin Ardlie
Philip W Kantoff
Michael F Berger
Stacey B Gabriel
Todd R Golub
Matthew Meyerson
Eric S Lander
Olivier Elemento
Gad Getz
Francesca Demichelis
Mark A Rubin
Levi A Garraway
Broad Institute · USCornell University · USDana-Farber Cancer Institute · USUniversity of Trento · ITBrigham and Women's Hospital · USMemorial Sloan Kettering Cancer Center · USWeizmann Institute of Science · ILWhitehead Institute for Biomedical Research · US

Funding

Large Scale Sequencing and Analysis of GenomesU54HG003067 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY, LANDER, ERIC S · 2004 to 2015
$568.6M
Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Tumor and Circulating Markers as Links Between Obesity and Lethal Prostate CanceP50CA090381 · NCI · DANA-FARBER CANCER INSTITUTE · PI KANTOFF, PHILIP W · 2002 to 2017
$36.2M
Epitomic Biomarkers of Prostate CancerU01CA111275 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CHINNAIYAN, ARUL M, RUBIN, MARK A. · 2004 to 2015
$6.8M
Towards Understanding Prostate Cancer HeterogeneityR01CA125612 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI RUBIN, MARK A. · 2007 to 2017
$3.4M
Defining Melanoma Therapeutic Avenues by Integrative Functional GenomicsDP2OD002750 · OD · DANA-FARBER CANCER INST · PI GARRAWAY, LEVI ALEXANDER · 2007 to 2007
$2.6M
Systematic Genetic Characterization of African American Prostate CancerU01CA162148 · NCI · DANA-FARBER CANCER INST · PI GARRAWAY, LEVI A. · 2012 to 2015
$1.3M
High-Throughput Tumor Genomic Profiling by Massively Parallel SequencingR33CA155554 · NCI · DANA-FARBER CANCER INST · PI GARRAWAY, LEVI A., MACCONAILL, LAURA E · 2011 to 2013
$717k
NCI NIH HHS P50 CA090381NCI NIH HHS R01 CA125612NCI NIH HHS R33 CA155554NCI NIH HHS U01 CA111275NCI NIH HHS U01CA111275NCI NIH HHS U01 CA162148NHGRI NIH HHS U54 HG003067NIGMS NIH HHS T32 GM007753NIGMS NIH HHS T32GM007753NIH HHS DP2 OD002750NIH HHS DP2OD002750
6 · The paper itself

Abstract

The analysis of exonic DNA from prostate cancers has identified recurrently mutated genes, but the spectrum of genome-wide alterations has not been profiled extensively in this disease. We sequenced the genomes of 57 prostate tumors and matched normal tissues to characterize somatic alterations and to study how they accumulate during oncogenesis and progression. By modeling the genesis of genomic rearrangements, we identified abundant DNA translocations and deletions that arise in a highly interdependent manner. This phenomenon, which we term "chromoplexy," frequently accounts for the dysregulation of prostate cancer genes and appears to disrupt multiple cancer genes coordinately. Our modeling suggests that chromoplexy may induce considerable genomic derangement over relatively few events in prostate cancer and other neoplasms, supporting a model of punctuated cancer evolution. By characterizing the clonal hierarchy of genomic lesions in prostate tumors, we charted a path of oncogenic events along which chromoplexy may drive prostate carcinogenesis.

Indexed as

Chromosome AberrationsGene Expression Regulation, NeoplasticGenome, HumanAdenocarcinomaCohort StudiesGenome-Wide Association StudyHumansMaleNeuroendocrine TumorsProstatic Neoplasms

Identifiers

PMID23622249
PMCPMC3690918
OpenAlexW2011957420

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.