Evidence map›Paper›PMID 23621842›Full record

ArticleBiochemistry2013

Crucial role of H322 in folding of the diphtheria toxin T-domain into the open-channel state.

Mauricio Vargas-Uribe, Mykola V Rodnin, Paul Kienker, Alan Finkelstein, Alexey S Ladokhin

Abstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Mauricio Vargas-UribeDepartment of Biochemistry and Molecular Biology, University of Kansas Medical Center , Kansas City, Kansas 66160, United States.
Mykola V Rodnin
Paul Kienker
Alan Finkelstein
Alexey S Ladokhin
University of Kansas Medical Center · USAlbert Einstein College of Medicine · US

Funding

INTERACTION OF MODEL SYNAPTIC VESICLES WITH LIPID BILAYR01GM029210 · NIGMS · YESHIVA UNIVERSITY · PI FINKELSTEIN, ALAN · 1985 to 2013
$6.0M
GATING OF PROTEIN CHANNELS IN LIPID BILAYER MEMBRANESR37GM029210 · NIGMS · YESHIVA UNIVERSITY · PI FINKELSTEIN, ALAN · 1995 to 2004
$3.5M
pH-Triggered Membrane Insertion of ProteinsR01GM069783 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI COCCO, MELANIE J, KURNIKOVA, MARIA G · 2004 to 2014
$2.5M
NIGMS NIH HHS GM-069783NIGMS NIH HHS GM-29210NIGMS NIH HHS R01 GM029210NIGMS NIH HHS R01 GM069783NIGMS NIH HHS R37 GM029210
6 · The paper itself

Abstract

The translocation (T) domain plays a key role in the entry of diphtheria toxin into the cell. Upon endosomal acidification, the T-domain undergoes a series of conformational changes that lead to its membrane insertion and formation of a channel. Recently, we have reported that the triple replacement of C-terminal histidines H322, H323, and H372 with glutamines prevents the formation of open channels in planar lipid bilayers. Here, we report that this effect is primarily due to the mutation of H322. We further examine the relationship between the loss of functionality and membrane folding in a series of mutants with C-terminal histidine substitutions using spectroscopic assays. The membrane insertion pathway for the mutants differs from that of the wild type as revealed by the membrane-induced red shift of tryptophan fluorescence at pH 6.0-6.5. T-Domain mutants with replacements at H323 and H372, but not at H322, regain a wild-type-like spectroscopic signature upon further acidification. Circular dichroism measurements confirm that affected mutants misfold during insertion into vesicles. Conductance measurements reveal that substituting H322 dramatically reduces the numbers of properly folded channels in a planar bilayer, but the properties of the active channels appear to be unaltered. We propose that H322 plays an important role in the formation of open channels and is involved in guiding the proper insertion of the N-terminal region of the T-domain into the membrane.

Indexed as

Protein FoldingBinding SitesCircular DichroismDiphtheria ToxinHistidineHydrogen-Ion ConcentrationLipid BilayersModels, MolecularMutationProtein ConformationTryptophanDiphtheria ToxinHistidineLipid BilayersTryptophan

Identifiers

PMID23621842
PMCPMC3772984
OpenAlexW2019195839

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.