Evidence map›Paper›PMID 23620590›Full record

ArticleThe Journal of biological chemistry2013

Structural insights into histone demethylase NO66 in interaction with osteoblast-specific transcription factor osterix and gene repression.

Yue Tao, Minhao Wu, Xing Zhou, Wu Yin, Bin Hu, Benoit de Crombrugghe, Krishna M Sinha, Jianye Zang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Mechanisms Regulating Muscle Protein Synthesis in CKD.Journal of the American Society of Nephrology : JASN · 2020
    Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Structure of the JmjC domain-containing protein NO66 complexed with ribosomal protein Rpl8.Acta crystallographica. Section D, Biological crystallography · 2015
    Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Yue TaoHefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230026, China; Key Laboratory of Structural Biology, Chinese Academy of Sciences, Hefei, Anhui 230027, China.
Minhao WuHefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230026, China; Key Laboratory of Structural Biology, Chinese Academy of Sciences, Hefei, Anhui 230027, China.
Xing ZhouHefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230026, China; Key Laboratory of Structural Biology, Chinese Academy of Sciences, Hefei, Anhui 230027, China.
Wu YinHefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230026, China; Key Laboratory of Structural Biology, Chinese Academy of Sciences, Hefei, Anhui 230027, China.
Bin HuHefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230026, China; Key Laboratory of Structural Biology, Chinese Academy of Sciences, Hefei, Anhui 230027, China.
Benoit de CrombruggheDepartments of Genetics, Houston, Texas.
Krishna M SinhaEndocrine Neoplasia and Hormonal Disorders, The University of Texas M.D. Anderson Cancer Center, Houston, Texas. Electronic address: ksinha@mdanderson.org.
Jianye ZangHefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230026, China; Key Laboratory of Structural Biology, Chinese Academy of Sciences, Hefei, Anhui 230027, China. Electronic address: zangjy@ustc.edu.cn.
University of Science and Technology of China · CNChinese Academy of Sciences · CNBaylor Genetics · USThe University of Texas MD Anderson Cancer Center · US

Funding

Epigenetic Control of Osteoblast Differentiation and Bone FormationR03AR061590 · NIAMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI SINHA, KRISHNA M · 2011 to 2013
$233k
NIAMS NIH HHS AR061590NIAMS NIH HHS R03 AR061590
6 · The paper itself

Abstract

Osterix (Osx) is an osteoblast-specific transcriptional factor and is required for osteoblast differentiation and bone formation. A JmjC domain-containing protein NO66 was previously found to participate in regulation of Osx transcriptional activity and plays an important role in osteoblast differentiation through interaction with Osx. Here, we report the crystal structure of NO66 forming in a functional tetramer. A hinge domain links the N-terminal JmjC domain and C-terminal winged helix-turn-helix domain of NO66, and both domains are essential for tetrameric assembly. The oligomerization interface of NO66 interacts with a conserved fragment of Osx. We show that the hinge domain-dependent oligomerization of NO66 is essential for inhibition of Osx-dependent gene activation. Our findings suggest that homo-oligomerization of JmjC domain containing proteins might play a physiological role through interactions with other regulatory factors during gene expression.

Indexed as

Chromosomal Proteins, Non-HistoneRepressor ProteinsTranscription FactorsCell DifferentiationCell LineCrystallography, X-RayDioxygenasesGene Expression RegulationHelix-Turn-Helix MotifsHistone DemethylasesHumansOsteoblastsProtein MultimerizationSp7 Transcription FactorTranscription, GeneticChromosomal Proteins, Non-HistoneDioxygenasesHistone DemethylasesRepressor ProteinsRIOX1 protein, humanSP7 protein, humanSp7 Transcription FactorTranscription FactorsBoneGeneral Transcription FactorsGene RegulationHistone ModificationOsteoblastsProtein Structure

Identifiers

PMID23620590
PMCPMC3675579
OpenAlexW2036407628

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.