Evidence map›Paper›PMID 23620586›Full record

ArticleThe Journal of biological chemistry2013

Identification of C18:1-phytoceramide as the candidate lipid mediator for hydroxyurea resistance in yeast.

Nabil Matmati, Alessandra Metelli, Kaushlendra Tripathi, Shuqi Yan, Bidyut K Mohanty, Yusuf A Hannun

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. The Many Faces of Lipids in Genome Stability (and How to Unmask Them).International journal of molecular sciences · 2021
    Review
  5. Yeast Sphingolipid Phospholipase GeneMolecular and cellular biology · 2020
    Article
  6. Visualizing bioactive ceramides.Chemistry and physics of lipids · 2018
    Review
  7. Sphingolipids and their metabolism in physiology and disease.Nature reviews. Molecular cell biology · 2018
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Morphogenesis checkpoint kinase Swe1 is the executor of lipolysis-dependent cell-cycle progression.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  16. Review
  17. Article
  18. The yeast sphingolipid signaling landscape.Chemistry and physics of lipids · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Nabil MatmatiStony Brook Cancer Center and the Department of Medicine, Stony Brook University, Stony Brook, New York 11794-8155, USA.
Alessandra Metelli
Kaushlendra Tripathi
Shuqi Yan
Bidyut K Mohanty
Yusuf A Hannun
Medical University of South Carolina · USStony Brook University · US

Funding

Translational Science Laboratory Shared ResourceP30CA138313 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI RAYMOND N. DUBOIS · 2009 to 2026
$42.7M
THE ROLE OF LACTOSYLCERAMIDE IN RENAL AGING AND DISEASEP20RR017677 · NCRR · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI MAO, CUNGUI · 2002 to 2011
$23.4M
Sphingomyelin Turnover and Cellular RegulationR37GM043825 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI HANNUN, YUSUF AWNI · 2007 to 2015
$3.7M
Modeling and Analysis of Yeast Sphingolipid MetabolismR01GM063265 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI HANNUN, YUSUF AWNI · 2001 to 2013
$3.4M
SPHINGOMYELIN TURNOVER AND CELLULAR REGULATIONR01GM043825 · NIGMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI HANNUN, YUSUF AWNI · 1991 to 2006
$2.2M
NCI NIH HHS P30 CA138313NCRR NIH HHS P20 RR017677NIGMS NIH HHS R01 GM043825NIGMS NIH HHS R01 GM063265NIGMS NIH HHS R01GM063265NIGMS NIH HHS R01GM43825NIGMS NIH HHS R37 GM043825
6 · The paper itself

Abstract

Recent studies showed that deletion of ISC1, the yeast homologue of the mammalian neutral sphingomyelinase, resulted in an increased sensitivity to hydroxyurea (HU). This raised an intriguing question as to whether sphingolipids are involved in pathways initiated by HU. In this study, we show that HU treatment led to a significant increase in Isc1 activity. Analysis of sphingolipid deletion mutants and pharmacological analysis pointed to a role for ceramide in mediating HU resistance. Lipid analysis revealed that HU induced increases in phytoceramides in WT cells but not in isc1Δ cells. To probe functions of specific ceramides, we developed an approach to supplement the medium with fatty acids. Oleate (C18:1) was the only fatty acid protecting isc1Δ cells from HU toxicity in a ceramide-dependent manner. Because phytoceramide activates protein phosphatases in yeast, we evaluated the role of CDC55, the regulatory subunit of ceramide-activated protein phosphatase PP2A. Overexpression of CDC55 overcame the sensitivity to HU in isc1Δ cells. However, addition of oleate did not protect the isc1Δ,cdc55Δ double mutant from HU toxicity. These results demonstrate that HU launches a lipid pathway mediated by a specific sphingolipid, C18:1-phytoceramide, produced by Isc1, which provides protection from HU by modulating Swe1 levels through the PP2A subunit Cdc55.

Indexed as

Drug Resistance, FungalCell Cycle ProteinsCeramidesEnzyme StabilityGene Knockout TechniquesHydroxyureaLipid MetabolismOleic AcidsProtein Phosphatase 2Protein-Tyrosine KinasesRibonucleotide ReductasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsType C PhospholipasesCDC55 protein, S cerevisiaeCell Cycle ProteinsCeramidesHydroxyureaISC1 protein, S cerevisiaeOleic AcidsProtein Phosphatase 2Protein-Tyrosine KinasesRibonucleotide ReductasesSaccharomyces cerevisiae ProteinsSWE1 protein, S cerevisiaeType C PhospholipasesCell CycleHydroxyureaPhosphataseSphingolipidStress ResponseYeast

Identifiers

PMID23620586
PMCPMC3682531
OpenAlexW1987856636

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.