Evidence map›Paper›PMID 23620400›Full record

ArticleJournal of the American Society of Nephrology : JASN2013

TNXB mutations can cause vesicoureteral reflux.

Rasheed A Gbadegesin, Patrick D Brophy, Adebowale Adeyemo, Gentzon Hall, Indra R Gupta, David Hains, Bartlomeij Bartkowiak, C Egla Rabinovich, Settara Chandrasekharappa, Alison Homstad and 13 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
9.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 69 citations in OpenAlex.

  1. Trial
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  8. The same heterozygousFrontiers in genetics · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Children with vesicoureteric reflux have joint hypermobility and occasional tenascin XB sequence variants.Canadian Urological Association journal = Journal de l'Association des urologues du Canada · 2020
    Article
  15. Tenascin-X-Discovery and Early Research.Frontiers in immunology · 2020
    Review
  16. Review
  17. Article
  18. DYRK1A-related intellectual disability: a syndrome associated with congenital anomalies of the kidney and urinary tract.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors at 10 institutions in 2 countries.

Rasheed A GbadegesinDivisions of Nephrology, Duke University Medical Center, Durham, NC 27710, USA. rasheed.gbadegesin@duke.edu
Patrick D Brophy
Adebowale Adeyemo
Gentzon Hall
Indra R Gupta
David Hains
Bartlomeij Bartkowiak
C Egla Rabinovich
Settara Chandrasekharappa
Alison Homstad
Katherine Westreich
Guanghong Wu
Yutao Liu
Danniele Holanda
Jason Clarke
Peter Lavin
Angelica Selim
Sara Miller
John S Wiener
Sherry S Ross
John Foreman
Charles Rotimi
Michelle P Winn
Pediatric Nephrology of Alabama · USDuke Medical Center · USUniversity of Iowa · USDuke University Hospital · USMcGill Genome Centre · CANational Human Genome Research Institute · USNational Institutes of Health · USCenter for Human Genetics · USDuke University · USMcGill University · CA

Funding

Genetic epidemiology of complex diseasesZIAHG200362 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI ROTIMI, CHARLES · 2009 to 2025
$54.7M
POSITIONAL CLONING OF THE MEN1 GENEZIAHG000029 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI CHANDRASEKHARAPPA, SETTARA · 2009 to 2025
$13.3M
NEUROPATHOLOGY COREP30AG028377 · NIA · DUKE UNIVERSITY · PI WELSH-BOHMER, KATHLEEN ANNE · 2006 to 2011
$9.6M
Understanding Obesity In Relation to the Built EnvironmentP20MD006899 · NIMHD · JACKSON STATE UNIVERSITY · PI PAYTON, MARINELLE · 2012 to 2016
$5.3M
Whole-genome sequencing for rare highly penetrant gene variants in schizophreniaRC2MH089915 · NIMH · DUKE UNIVERSITY · PI GOLDSTEIN, DAVID B. · 2009 to 2011
$4.6M
Full Human Genome Sequencing in ALSRC2NS070342 · NINDS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI BROWN, ROBERT H. · 2009 to 2010
$3.6M
Genetic epidemiology of complex diseasesZ01HG200362 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI ROTIMI, CHARLES · 2008 to 2008
$1.7M
Genetic Variations and Development of Vesicoureteral Reflux and SequelaeRC4DK090937 · NIDDK · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI HAINS, DAVID SULLIVAN, SCHWADERER, ANDREW LAWRENCE · 2010 to 2010
$1.5M
A New Locus for Hereditary FSGS on Chromosome 2pK08DK082495 · NIDDK · DUKE UNIVERSITY · PI GBADEGESIN, RASHEED ADEBAYO · 2009 to 2013
$665k
Determinants of protection in HIV-exposed seronegative men R56AI098588 · NIAID · DUKE UNIVERSITY · PI GOLDSTEIN, DAVID B. · 2012 to 2012
$499k
IDENTIFICATION OF VUR GENES BY COMBINED LINKAGE ANALYSIS AND EXOME SEQUENCINGR21DK096200 · NIDDK · DUKE UNIVERSITY · PI GBADEGESIN, RASHEED ADEBAYO · 2013 to 2014
$429k
Intramural NIH HHS Z01 HG200362NIAID NIH HHS 1R56AI098588-01A1NIAID NIH HHS R56 AI098588NIA NIH HHS P30 AG028377NIA NIH HHS P30AG028377NIDDK NIH HHS K08 DK082495NIDDK NIH HHS K08DK082495-03NIDDK NIH HHS R21 DK096200NIDDK NIH HHS RC4 DK090937NIDDK NIH HHS RC4DK090937NIMHD NIH HHS P20 MD006899NIMH NIH HHS RC2 MH089915NIMH NIH HHS RC2MH089915NINDS NIH HHS 1RC2NS070342-01NINDS NIH HHS RC2 NS070342
6 · The paper itself

Abstract

Primary vesicoureteral reflux (VUR) is the most common congenital anomaly of the kidney and the urinary tract, and it is a major risk factor for pyelonephritic scarring and CKD in children. Although twin studies support the heritability of VUR, specific genetic causes remain elusive. We performed a sequential genome-wide linkage study and whole-exome sequencing in a family with hereditary VUR. We obtained a significant multipoint parametric logarithm of odds score of 3.3 on chromosome 6p, and whole-exome sequencing identified a deleterious heterozygous mutation (T3257I) in the gene encoding tenascin XB (TNXB in 6p21.3). This mutation segregated with disease in the affected family as well as with a pathogenic G1331R change in another family. Fibroblast cell lines carrying the T3257I mutation exhibited a reduction in both cell motility and phosphorylated focal adhesion kinase expression, suggesting a defect in the focal adhesions that link the cell cytoplasm to the extracellular matrix. Immunohistochemical studies revealed that the human uroepithelial lining of the ureterovesical junction expresses TNXB, suggesting that TNXB may be important for generating tensile forces that close the ureterovesical junction during voiding. Taken together, these results suggest that mutations in TNXB can cause hereditary VUR.

Indexed as

Cell AdhesionCell MovementFemaleGenome-Wide Association StudyHeterozygoteHumansKidneyMaleMutationPedigreeSequence Analysis, DNATenascinUrinary TractVesico-Ureteral RefluxTenascintenascin X

Identifiers

PMID23620400
PMCPMC3736717
OpenAlexW2109861127

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.