Evidence map›Paper›PMID 23620299›Full record

ArticleNucleic acids research2013

Reconstitution and characterization of eukaryotic N6-threonylcarbamoylation of tRNA using a minimal enzyme system.

Leo C K Wan, Daniel Y L Mao, Dante Neculai, Jonathan Strecker, David Chiovitti, Igor Kurinov, Gennadiy Poda, Neroshan Thevakumaran, Fang Yuan, Rachel K Szilard and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
  2. Catalytic and regulatory basis of tRNA tNature communications · 2026
    Article
  3. Article
  4. Genetically Predicted tClinical, cosmetic and investigational dermatology · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Conservation and Diversification of tRNA tInternational journal of molecular sciences · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Leo C K WanSamuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, ON M5G 1X5, Canada.
Daniel Y L Mao
Dante Neculai
Jonathan Strecker
David Chiovitti
Igor Kurinov
Gennadiy Poda
Neroshan Thevakumaran
Fang Yuan
Rachel K Szilard
Elena Lissina
Corey Nislow
Amy A Caudy
Daniel Durocher
Frank Sicheri
SickKids Foundation · CAMount Sinai Hospital · CACornell University · USLunenfeld-Tanenbaum Research Institute · CAOntario Institute for Cancer Research · CAUniversity of Toronto · CA

Funding

Y-FAMILY POLYMERASES AND CO-FACTORS IN TRANSLESION REPLICATIONP41RR015301 · NCRR · CORNELL UNIVERSITY ITHACA · PI EISENBERG, DAVID · 2001 to 2011
$28.2M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
NCRR NIH HHS 5P41RR015301-10NIGMS NIH HHS 8 P41 GM103403-10
6 · The paper itself

Abstract

The universally conserved Kae1/Qri7/YgjD and Sua5/YrdC protein families have been implicated in growth, telomere homeostasis, transcription and the N6-threonylcarbamoylation (t(6)A) of tRNA, an essential modification required for translational fidelity by the ribosome. In bacteria, YgjD orthologues operate in concert with the bacterial-specific proteins YeaZ and YjeE, whereas in archaeal and eukaryotic systems, Kae1 operates as part of a larger macromolecular assembly called KEOPS with Bud32, Cgi121, Gon7 and Pcc1 subunits. Qri7 orthologues function in the mitochondria and may represent the most primitive member of the Kae1/Qri7/YgjD protein family. In accordance with previous findings, we confirm that Qri7 complements Kae1 function and uncover that Qri7 complements the function of all KEOPS subunits in growth, t(6)A biosynthesis and, to a partial degree, telomere maintenance. These observations suggest that Kae1 provides a core essential function that other subunits within KEOPS have evolved to support. Consistent with this inference, Qri7 alone is sufficient for t(6)A biosynthesis with Sua5 in vitro. In addition, the 2.9 Å crystal structure of Qri7 reveals a simple homodimer arrangement that is supplanted by the heterodimerization of YgjD with YeaZ in bacteria and heterodimerization of Kae1 with Pcc1 in KEOPS. The partial complementation of telomere maintenance by Qri7 hints that KEOPS has evolved novel functions in higher organisms.

Indexed as

AdenosineDimerizationDNA-Binding ProteinsMetalloendopeptidasesMitochondrial ProteinsModels, MolecularProtein SubunitsRNA, TransferSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTelomere HomeostasisAdenosineDNA-Binding ProteinsKae1 protein, S cerevisiaeMetalloendopeptidasesMitochondrial ProteinsN(6)-(N-threonylcarbonyl)adenosineProtein SubunitsQri7 protein, S cerevisiaeRNA, TransferSaccharomyces cerevisiae ProteinsSUA5 protein, S cerevisiae

Identifiers

PMID23620299
PMCPMC3695523
OpenAlexW2083969274

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.