ArticleNucleic acids research2013
DIALIGN at GOBICS--multiple sequence alignment using various sources of external information.
Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed.
- Revisiting Algorithms, Tools, and Applications for Sequence and Phylogenetic Analyses in the NGS-Based Omics Era.Biochemical genetics · 2026Review
- Clustering-based progressive alignment with fuzzy logic (CPA-FL).Biochemistry and biophysics reports · 2026Article
- Physiological and Putative Organic Cation Transporter Expression Response to Alizarin Dye Exposure inInsects · 2025Article
- Nucleotide-induced hyper-oligomerization inactivates transcription termination factor ρ.Nature communications · 2025Article
- Workflow to Select Functional Promoter DNA Baits and Screen Arrayed Gene Libraries in Yeast.Current protocols · 2024Article
- Discovery of numerous novel Helitron-like elements in eukaryote genomes using HELIANO.Nucleic acids research · 2024Article
- Structure and RNA-binding of the helically extended Roquin CCCH-type zinc finger.Nucleic acids research · 2024Article
- NGlyAlign: an automated library building tool to align highly divergent HIV envelope sequences.BMC bioinformatics · 2021Article
- AutoCloner: automatic homologue-specific primer design for full-gene cloning in polyploids.BMC bioinformatics · 2020Article
- Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses inPlants (Basel, Switzerland) · 2020Article
- Article
- Molecular Determinants Elucidate the Selectivity in Abscisic Acid Receptor and HAB1 Protein Interactions.Frontiers in chemistry · 2020Article
- ProbPFP: a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function.BMC bioinformatics · 2019Article
- Genome-Wide Identification and Expression Analyses of the Chitinases under Cold and Osmotic stress inGenes · 2019Article
- In-silico Design of DNA Oligonucleotides: Challenges and Approaches.Computational and structural biotechnology journal · 2019Review
- Peptide-based functional annotation of carbohydrate-active enzymes by conserved unique peptide patterns (CUPP).Biotechnology for biofuels · 2019Article
- Expansion of gene clusters, circular orders, and the shortest Hamiltonian path problem.Journal of mathematical biology · 2018Article
- A hydrophobic residue in the TALE homeodomain of PBX1 promotes epithelial-to-mesenchymal transition of gastric carcinoma.Oncotarget · 2017Article
- PnpProbs: a better multiple sequence alignment tool by better handling of guide trees.BMC bioinformatics · 2016Article
- HOXB9 induction of mesenchymal-to-epithelial transition in gastric carcinoma is negatively regulated by its hexapeptide motif.Oncotarget · 2015Article
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
DIALIGN is an established tool for multiple sequence alignment that is particularly useful to detect local homologies in sequences with low overall similarity. In recent years, various versions of the program have been developed, some of which are fully automated, whereas others are able to accept user-specified external information. In this article, we review some versions of the program that are available through 'Göttingen Bioinformatics Compute Server'. In addition to previously described implementations, we present a new release of DIALIGN called 'DIALIGN-PFAM', which uses hits to the PFAM database for improved protein alignment. Our software is available through http://dialign.gobics.de/.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.