Evidence map›Paper›PMID 23619366›Full record

ArticleThe Journal of clinical investigation2013

A disease-associated PTPN22 variant promotes systemic autoimmunity in murine models.

Xuezhi Dai, Richard G James, Tania Habib, Swati Singh, Shaun Jackson, Socheath Khim, Randall T Moon, Denny Liggitt, Alejandro Wolf-Yadlin, Jane H Buckner and 1 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 118 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
118citing papers in PubMed, 1 pooled it
11.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

118 citing papers in PubMed, 1 synthesis or guideline pooled it, 181 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. An autoimmunity-associated allele ofProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. An Autoimmunity-associated allele ofbioRxiv : the preprint server for biology · 2025
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. CARD19, a Novel Regulator of the TAK1/NF-κB Pathway in Self-Reactive B Cells.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Article
  15. eLife · 2023
    Article
  16. Article
  17. Genetic Polymorphism ofMedicina (Kaunas, Lithuania) · 2022
    Review
  18. Review
  19. Age-associated B cells in autoimmune diseases.Cellular and molecular life sciences : CMLS · 2022
    Review
  20. Review

58 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Xuezhi DaiDepartment of Pediatrics, University of Washington School of Medicine, Seattle, Washington, USA.
Richard G James
Tania Habib
Swati Singh
Shaun Jackson
Socheath Khim
Randall T Moon
Denny Liggitt
Alejandro Wolf-Yadlin
Jane H Buckner
David J Rawlings
University of Washington · USSeattle Children's Hospital · USVirginia Mason Medical Center · US

Funding

Defining the functional impact of T1D genes in mouse and man: a unified strategyDP3DK097672 · NIDDK · BENAROYA RESEARCH INST AT VIRGINIA MASON · PI BUCKNER, JANE HOYT · 2012 to 2013
$4.4M
Lentiviral Gene Therapy for Wiskott-Aldrich SyndromeR01AI071163 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI RAWLINGS, DAVID J · 2008 to 2012
$3.5M
REGULATION OF B CELL DEVELOPMENT AND SIGNALING BY BTKR01HD037091 · NICHD · UNIVERSITY OF WASHINGTON · PI RAWLINGS, DAVID J · 1999 to 2008
$2.7M
Lentiviral Gene Therapy of X-Linked AgammaglobulinemiaR01AI084457 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI RAWLINGS, DAVID J · 2012 to 2015
$2.5M
Lentiviral Gene Therapy of X-linked AgammaglobulinemiaR01HL075453 · NHLBI · SEATTLE CHILDREN'S HOSPITAL · PI RAWLINGS, DAVID J · 2004 to 2008
$1.9M
In vivo role of BTK-mediated inhibition of Wnt/b-catenin signaling during hematopR00HL103768 · NHLBI · SEATTLE CHILDREN'S HOSPITAL · PI JAMES, RICHARD GOFF · 2012 to 2014
$717k
Lentiviral Gene Therapy for Wiskott-Aldrich SyndromeR56AI071163 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI RAWLINGS, DAVID J · 2007 to 2007
$615k
Lentiviral Gene Therapy of X-linked AgammaglobulinemiaR56AI084457 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI RAWLINGS, DAVID J · 2009 to 2009
$398k
In vivo role of BTK-mediated inhibition of Wnt/b-catenin signaling during hematopK99HL103768 · NHLBI · UNIVERSITY OF WASHINGTON · PI JAMES, RICHARD GOFF · 2010 to 2011
$254k
Howard Hughes Medical InstituteNHLBI NIH HHS HL075453NHLBI NIH HHS K99 HL103768NHLBI NIH HHS K99-HL103768NHLBI NIH HHS R00 HL103768NHLBI NIH HHS R01 HL075453NIAID NIH HHS AI071163NIAID NIH HHS AI084457NIAID NIH HHS R01 AI084457NIAID NIH HHS R56 AI084457NICHD NIH HHS HD037091NICHD NIH HHS R01 HD037091NIDDK NIH HHS DP3 DK097672
6 · The paper itself

Abstract

Multiple autoimmune diseases, including type 1 diabetes, rheumatoid arthritis, Graves disease, and systemic lupus erythematosus, are associated with an allelic variant of protein tyrosine phosphatase nonreceptor 22 (PTPN22), which encodes the protein LYP. To model the human disease-linked variant LYP-R620W, we generated knockin mice expressing the analogous mutation, R619W, in the murine ortholog PEST domain phosphatase (PEP). In contrast with a previous report, we found that this variant exhibits normal protein stability, but significantly alters lymphocyte function. Aged knockin mice exhibited effector T cell expansion and transitional, germinal center, and age-related B cell expansion as well as the development of autoantibodies and systemic autoimmunity. Further, PEP-R619W affected B cell selection and B lineage-restricted variant expression and was sufficient to promote autoimmunity. Consistent with these features, PEP-R619W lymphocytes were hyperresponsive to antigen-receptor engagement with a distinct profile of tyrosine-phosphorylated substrates. Thus, PEP-R619W uniquely modulates T and B cell homeostasis, leading to a loss in tolerance and autoimmunity.

Indexed as

AnimalsAutoimmune DiseasesAutoimmunityB-LymphocytesCalciumCell LineageCell SurvivalCrosses, GeneticCycloheximideDisease Models, AnimalEnzyme-Linked Immunosorbent AssayGenetic VariationHomeostasisLymphocytesMaleMiceCalciumCycloheximideProtein Tyrosine Phosphatase, Non-Receptor Type 12Protein Tyrosine Phosphatase, Non-Receptor Type 22Ptpn22 protein, mouse

Identifiers

PMID23619366
PMCPMC3638909
OpenAlexW2110709185

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.