Evidence map›Paper›PMID 23619168›Full record

ArticleCancer discovery2013

Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers.

Curtis R Pickering, Jiexin Zhang, Suk Young Yoo, Linnea Bengtsson, Shhyam Moorthy, David M Neskey, Mei Zhao, Marcus V Ortega Alves, Kyle Chang, Jennifer Drummond and 15 more

Abstract read
In one paragraph

Article in Cancer discovery, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 334 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
334citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

334 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Tipifarnib in Head and Neck Squamous Cell Carcinoma WithJournal of clinical oncology : official journal of the American Society of Clinical Oncology · 2021
    Trial
  5. Trial
  6. Inhibition of mTOR Signaling and Clinical Activity of Rapamycin in Head and Neck Cancer in a Window of Opportunity Trial.Clinical cancer research : an official journal of the American Association for Cancer Research · 2019
    Trial
  7. Trial
  8. Longitudinal Morphomolecular Monitoring of Head and Neck Carcinogenesis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  9. Review
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274 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Curtis R PickeringDepartments of Head and Neck Surgery, The University of Texas MD Anderson Cancer Center, Temple University School of Medicine, Philadelphia, Pennsylvania, USA.
Jiexin Zhang
Suk Young Yoo
Linnea Bengtsson
Shhyam Moorthy
David M Neskey
Mei Zhao
Marcus V Ortega Alves
Kyle Chang
Jennifer Drummond
Elsa Cortez
Tong-Xin Xie
Di Zhang
Woonbok Chung
Jean-Pierre J Issa
Patrick A Zweidler-McKay
Xifeng Wu
Adel K El-Naggar
John N Weinstein
Jing Wang
Donna M Muzny
Richard A Gibbs
David A Wheeler
Jeffrey N Myers
Mitchell J Frederick

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Targeting the p53 pathway for reversal of oral premalignancyP50CA097007 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI MYERS, JEFFREY NICHOLAS · 2002 to 2012
$26.1M
Comprehensive Analysis of Genetic Alterations in Oral CancerRC2DE020958 · NIDCR · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI GIBBS, RICHARD A, MYERS, JEFFREY NICHOLAS · 2009 to 2010
$2.4M
NCI NIH HHS P30 CA016672NCI NIH HHS P30CA0CA16672NCI NIH HHS P50 CA097007NCI NIH HHS P50CA097007NHGRI NIH HHS U54 HG003273NIDCR NIH HHS RC2 DE020958NIDCR NIH HHS RC2DE020958
6 · The paper itself

Abstract

The survival of patients with oral squamous cell carcinoma (OSCC) has not changed significantly in several decades, leading clinicians and investigators to search for promising molecular targets. To this end, we conducted comprehensive genomic analysis of gene expression, copy number, methylation, and point mutations in OSCC. Integrated analysis revealed more somatic events than previously reported, identifying four major driver pathways (mitogenic signaling, Notch, cell cycle, and TP53) and two additional key genes (FAT1, CASP8). The Notch pathway was defective in 66% of patients, and in follow-up studies of mechanism, functional NOTCH1 signaling inhibited proliferation of OSCC cell lines. Frequent mutation of caspase-8 (CASP8) defines a new molecular subtype of OSCC with few copy number changes. Although genomic alterations are dominated by loss of tumor suppressor genes, 80% of patients harbored at least one genomic alteration in a targetable gene, suggesting that novel approaches to treatment may be possible for this debilitating subset of head and neck cancers.

Indexed as

Carcinoma, Squamous CellCaspase 8Cell Line, TumorDNA Copy Number VariationsDNA MethylationGene Expression Regulation, NeoplasticGenomicsHumansMouth NeoplasmsPoint MutationReceptors, NotchCaspase 8Receptors, Notch

Identifiers

PMID23619168
PMCPMC3858325

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.