Evidence map›Paper›PMID 23618999›Full record

ArticleMicrobiology (Reading, England)2013

Pseudomonas putida F1 has multiple chemoreceptors with overlapping specificity for organic acids.

Rebecca E Parales, Rita A Luu, Grischa Y Chen, Xianxian Liu, Victoria Wu, Pamela Lin, Jonathan G Hughes, Vasyl Nesteryuk, Juanito V Parales, Jayna L Ditty

Abstract read
In one paragraph

Article in Microbiology (Reading, England), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Genetic factors involved in rhizosphere colonization by phytobeneficialComputational and structural biotechnology journal · 2020
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Sensory Repertoire of Bacterial Chemoreceptors.Microbiology and molecular biology reviews : MMBR · 2017
    Review
  10. Article
  11. Article
  12. Article
  13. Identification of a Chemoreceptor inFrontiers in microbiology · 2016
    Article
  14. Article
  15. Identification of a Chemoreceptor for C2 and C3 Carboxylic Acids.Applied and environmental microbiology · 2015
    Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Rebecca E ParalesDepartment of Microbiology, College of Biological Sciences, University of California, Davis, CA, USA.
Rita A LuuDepartment of Microbiology, College of Biological Sciences, University of California, Davis, CA, USA.
Grischa Y ChenDepartment of Microbiology, College of Biological Sciences, University of California, Davis, CA, USA.
Xianxian LiuDepartment of Microbiology, College of Biological Sciences, University of California, Davis, CA, USA.
Victoria WuDepartment of Microbiology, College of Biological Sciences, University of California, Davis, CA, USA.
Pamela LinDepartment of Microbiology, College of Biological Sciences, University of California, Davis, CA, USA.
Jonathan G HughesDepartment of Microbiology, College of Biological Sciences, University of California, Davis, CA, USA.
Vasyl NesteryukDepartment of Microbiology, College of Biological Sciences, University of California, Davis, CA, USA.
Juanito V ParalesDepartment of Microbiology, College of Biological Sciences, University of California, Davis, CA, USA.
Jayna L DittyDepartment of Biology, University of St. Thomas, St. Paul, MN, USA.
University of California, Davis · USUniversity of St. Thomas - Minnesota · US

Funding

UC Davis MCB T32 Administrative Supplement to Recognize Excellence in Diversity, Equity, Inclusion, and Accessibility (DEIA) MentorshipT32GM007377 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI CHEDIN, FREDERIC LOUIS · 1985 to 2023
$9.9M
NIGMS NIH HHS T32 GM007377
6 · The paper itself

Abstract

Previous studies have demonstrated that Pseudomonas putida strains are not only capable of growth on a wide range of organic substrates, but also chemotactic towards many of these compounds. However, in most cases the specific chemoreceptors that are involved have not been identified. The complete genome sequences of P. putida strains F1 and KT2440 revealed that each strain is predicted to encode 27 methyl-accepting chemotaxis proteins (MCPs) or MCP-like proteins, 25 of which are shared by both strains. It was expected that orthologous MCPs in closely related strains of the same species would be functionally equivalent. However, deletion of the gene encoding the P. putida F1 orthologue (locus tag Pput_4520, designated mcfS) of McpS, a known receptor for organic acids in P. putida KT2440, did not result in an obvious chemotaxis phenotype. Therefore, we constructed individual markerless MCP gene deletion mutants in P. putida F1 and screened for defective sensory responses to succinate, malate, fumarate and citrate. This screen resulted in the identification of a receptor, McfQ (locus tag Pput_4894), which responds to citrate and fumarate. An additional receptor, McfR (locus tag Pput_0339), which detects succinate, malate and fumarate, was found by individually expressing each of the 18 genes encoding canonical MCPs from strain F1 in a KT2440 mcpS-deletion mutant. Expression of mcfS in the same mcpS deletion mutant demonstrated that, like McfR, McfS responds to succinate, malate, citrate and fumarate. Therefore, at least three receptors, McfR, McfS, and McfQ, work in concert to detect organic acids in P. putida F1.

Indexed as

ChemotaxisBacterial ProteinsCarboxylic AcidsGene DeletionMembrane ProteinsMethyl-Accepting Chemotaxis ProteinsPseudomonas putidaSubstrate SpecificityBacterial ProteinsCarboxylic AcidsMembrane ProteinsMethyl-Accepting Chemotaxis Proteins

Identifiers

PMID23618999
PMCPMC4085986
OpenAlexW2063404970

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.