ArticleBMC genomics2013
A consensus map of rapeseed (Brassica napus L.) based on diversity array technology markers: applications in genetic dissection of qualitative and quantitative traits.
Article in BMC genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.
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Who cites it
35 citing papers in PubMed, 1 synthesis or guideline pooled it, 70 citations in OpenAlex.
- QTL meta-analysis of root traits in Brassica napus under contrasting phosphorus supply in two growth systems.Scientific reports · 2016Pooled it
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- Identification of SNP markers associated with yield in winter oilseed rape (Brassica napus L.) hybrids.Journal of applied genetics · 2026Article
- Unlocking the Genetic Blueprint of Erucic Acid Content in Mustard (Brassica napus): A Meta-QTL Exploration.TheScientificWorldJournal · 2026Article
- Genetic mapping of stripe rust resistance in a geographically diverse barley collection and selected biparental populations.Frontiers in plant science · 2024Article
- Transfer and transformation characteristics of Zn and Cd in soil-rotation plant (Brassica napus L and Oryza sativa L) system and its influencing factors.Scientific reports · 2023Article
- Overexpressing Arabidopsis thaliana ACBP6 in transgenic rapid-cycling Brassica napus confers cold tolerance.Plant methods · 2022Article
- Construction of a Quantitative Genomic Map, Identification and Expression Analysis of Candidate Genes for Agronomic and Disease-Related Traits inFrontiers in plant science · 2022Article
- Genome-wide association study uncovers genomic regions associated with grain iron, zinc and protein content in pearl millet.Scientific reports · 2020Article
- Genetic dissection of thousand-seed weight and fine mapping of cqSW.A03-2 via linkage and association analysis in rapeseed (Brassica napus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- QTL and Candidate Gene Identification for Silique Length Based on High-Dense Genetic Map inFrontiers in plant science · 2019Article
- A consensus linkage map of lentil based on DArT markers from three RIL mapping populations.PloS one · 2018Article
- QTL Alignment for Seed Yield and Yield Related Traits inFrontiers in plant science · 2018Article
- Synteny analysis of genes and distribution of loci controlling oil content and fatty acid profile based on QTL alignment map in Brassica napus.BMC genomics · 2017Article
- Brassica napus DS-3, encoding a DELLA protein, negatively regulates stem elongation through gibberellin signaling pathway.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- A high-density genetic map and QTL analysis of agronomic traits in foxtail millet [Setaria italica (L.) P. Beauv.] using RAD-seq.PloS one · 2017Article
- Molecular Mapping of Oil Content and Fatty Acids Using Dense Genetic Maps in Groundnut (Frontiers in plant science · 2017Article
- Narrowing down the single homoeologous FaPFRU locus controlling flowering in cultivated octoploid strawberry using a selective mapping strategy.Plant biotechnology journal · 2016Article
- Multi-environment QTL studies suggest a role for cysteine-rich protein kinase genes in quantitative resistance to blackleg disease in Brassica napus.BMC plant biology · 2016Article
- Quantitative trait loci analysis and genome-wide comparison for silique related traits in Brassica napus.BMC plant biology · 2016Article
Corrections and comments
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Authors and funding
16 authors at 5 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundDense consensus genetic maps based on high-throughput genotyping platforms are valuable for making genetic gains in Brassica napus through quantitative trait locus identification, efficient predictive molecular breeding, and map-based gene cloning. This report describes the construction of the first B. napus consensus map consisting of a 1,359 anchored array based genotyping platform; Diversity Arrays Technology (DArT), and non-DArT markers from six populations originating from Australia, Canada, China and Europe. We aligned the B. napus DArT sequences with genomic scaffolds from Brassica rapa and Brassica oleracea, and identified DArT loci that showed linkage with qualitative and quantitative loci associated with agronomic traits.
resultsThe integrated consensus map covered a total of 1,987.2 cM and represented all 19 chromosomes of the A and C genomes, with an average map density of one marker per 1.46 cM, corresponding to approximately 0.88 Mbp of the haploid genome. Through in silico physical mapping 2,457 out of 3,072 (80%) DArT clones were assigned to the genomic scaffolds of B. rapa (A genome) and B. oleracea (C genome). These were used to orientate the genetic consensus map with the chromosomal sequences. The DArT markers showed linkage with previously identified non-DArT markers associated with qualitative and quantitative trait loci for plant architecture, phenological components, seed and oil quality attributes, boron efficiency, sucrose transport, male sterility, and race-specific resistance to blackleg disease.
conclusionsThe DArT markers provide increased marker density across the B. napus genome. Most of the DArT markers represented on the current array were sequenced and aligned with the B. rapa and B. oleracea genomes, providing insight into the Brassica A and C genomes. This information can be utilised for comparative genomics and genomic evolution studies. In summary, this consensus map can be used to (i) integrate new generation markers such as SNP arrays and next generation sequencing data; (ii) anchor physical maps to facilitate assembly of B. napus genome sequences; and (iii) identify candidate genes underlying natural genetic variation for traits of interest.
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