ArticleRNA (New York, N.Y.)2013
miRNA-Seq normalization comparisons need improvement.
Article in RNA (New York, N.Y.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
17 citing papers in PubMed.
- Reference gene selection for real-time qPCR in European flounder (Platichthys flesus) using organ-specific RNA-seq data.Molecular biology reports · 2024Article
- Performance evaluation of transcriptomics data normalization for survival risk prediction.Briefings in bioinformatics · 2021Article
- Measurements Methods for the Development of MicroRNA-Based Tests for Cancer Diagnosis.International journal of molecular sciences · 2021Review
- A graph-based algorithm for RNA-seq data normalization.PloS one · 2020Article
- Essential guidelines for computational method benchmarking.Genome biology · 2019Review
- Identifying and characterizing functional 3' nucleotide addition in the miRNA pathway.Methods (San Diego, Calif.) · 2019Review
- RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs database.BMC genomics · 2018Article
- Medium term water deficit elicits distinct transcriptome responses in Eucalyptus species of contrasting environmental origin.BMC genomics · 2017Article
- QuickMIRSeq: a pipeline for quick and accurate quantification of both known miRNAs and isomiRs by jointly processing multiple samples from microRNA sequencing.BMC bioinformatics · 2017Article
- Circulating microRNAs as Potential Biomarkers of Infectious Disease.Frontiers in immunology · 2017Review
- SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data.PloS one · 2016Article
- Optimization of miRNA-seq data preprocessing.Briefings in bioinformatics · 2015Article
- Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization.Nucleic acids research · 2015Article
- iSRAP - a one-touch research tool for rapid profiling of small RNA-seq data.Journal of extracellular vesicles · 2015Article
- Cross Platform Standardisation of an Experimental Pipeline for Use in the Identification of Dysregulated Human Circulating MiRNAs.PloS one · 2015Article
- Identification of tubular injury microRNA biomarkers in urine: comparison of next-generation sequencing and qPCR-based profiling platforms.BMC genomics · 2014Article
- The validity of circulating microRNAs in oncology: five years of challenges and contradictions.Molecular oncology · 2014Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
PubMed holds no abstract for this paper.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.