Evidence map›Paper›PMID 23615910›Full record

ArticleThe Journal of biological chemistry2013

Crystal structure of Mycobacterium tuberculosis polyketide synthase 11 (PKS11) reveals intermediates in the synthesis of methyl-branched alkylpyrones.

Kuppan Gokulan, Seán E O'Leary, William K Russell, David H Russell, Mallikarjun Lalgondar, Tadhg P Begley, Thomas R Ioerger, James C Sacchettini

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. Computational and structural biotechnology journal · 2025
    Article
  4. Article
  5. Post-translational modifications in the Protein Data Bank.Acta crystallographica. Section D, Structural biology · 2024
    Review
  6. Article
  7. Identification of 1,3,6,8-Tetrahydroxynaphthalene Synthase (ThnA) fromJournal of microbiology and biotechnology · 2023
    Article
  8. Cloning and Molecular Characterization of theAntibiotics (Basel, Switzerland) · 2023
    Article
  9. Article
  10. Review
  11. Review
  12. Genome mining reveals uncommon alkylpyrones as type III PKS products from myxobacteria.Journal of industrial microbiology & biotechnology · 2019
    Article
  13. Article
  14. Synthesis andMedChemComm · 2018
    Article
  15. Review
  16. Article
  17. Review
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Kuppan GokulanDepartments of Biochemistry and Biophysics, College Station, Texas 77843.
Seán E O'LearyChemistry, College Station, Texas 77843.
William K RussellChemistry, College Station, Texas 77843.
David H RussellChemistry, College Station, Texas 77843.
Mallikarjun LalgondarDepartments of Biochemistry and Biophysics, College Station, Texas 77843.
Tadhg P BegleyChemistry, College Station, Texas 77843.
Thomas R IoergerComputer Science and Engineering, Texas A&M University, College Station, Texas 77843.
James C SacchettiniDepartments of Biochemistry and Biophysics, College Station, Texas 77843. Electronic address: sacchett@tamu.edu.
Texas College · USMitchell Institute · USTexas A&M University · US

Funding

Vulnerabilities in Mycobacterial Cell-Wall BiogenesisP01AI095208 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI STROUD, ROBERT M · 2012 to 2022
$19.8M
NIAID NIH HHS P01 AI095208NIAID NIH HHS P01AI095208
6 · The paper itself

Abstract

PKS11 is one of three type III polyketide synthases (PKSs) identified in Mycobacterium tuberculosis. Although many PKSs in M. tuberculosis have been implicated in producing complex cell wall glycolipids, the biological function of PKS11 is unknown. PKS11 has previously been proposed to synthesize alkylpyrones from fatty acid substrates. We solved the crystal structure of M. tuberculosis PKS11 and found the overall fold to be similar to other type III PKSs. PKS11 has a deep hydrophobic tunnel proximal to the active site Cys-138 to accommodate substrates. We observed electron density in this tunnel from a co-purified molecule that was identified by mass spectrometry to be palmitate. Co-crystallization with malonyl-CoA (MCoA) or methylmalonyl-CoA (MMCoA) led to partial turnover of the substrate, resulting in trapped intermediates. Reconstitution of the reaction in solution confirmed that both co-factors are required for optimal activity, and kinetic analysis shows that MMCoA is incorporated first, then MCoA, followed by lactonization to produce methyl-branched alkylpyrones.

Indexed as

Bacterial ProteinsCatalytic DomainCrystallography, X-RayMalonyl Coenzyme AMass SpectrometryMycobacterium tuberculosisPolyketide SynthasesPyronesBacterial ProteinsMalonyl Coenzyme APolyketide SynthasesPyronesAlkylpyronesCrystallographyCrystal StructureLipidsLipid SynthesisMycobacterium tuberculosisPKS11PolyketidesTuberculosis

Identifiers

PMID23615910
PMCPMC3675584
OpenAlexW1987615701

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.