Evidence map›Paper›PMID 23615905›Full record

ArticleThe Journal of biological chemistry2013

Role of central metabolism in the osmoadaptation of the halophilic bacterium Chromohalobacter salexigens.

José M Pastor, Vicente Bernal, Manuel Salvador, Montserrat Argandoña, Carmen Vargas, Laszlo Csonka, Angel Sevilla, José L Iborra, Joaquín J Nieto, Manuel Cánovas

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
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  13. Genome analysis of the salt-resistant Paludifilum halophilum DSM 102817World journal of microbiology & biotechnology · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Anaplerotic Pathways inFrontiers in microbiology · 2020
    Article
  18. Article
  19. Article
  20. Protective effects of compatible solute ectoine against ethanol-induced toxic alterations in Daphnia magna.Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

José M PastorDepartamento de Bioquímica y Biología Molecular B e Inmunología. Facultad de Química, Campus Regional de Excelencia Internacional "Campus Mare Nostrum," Universidad de Murcia, 30100 Murcia, Spain.
Vicente Bernal
Manuel Salvador
Montserrat Argandoña
Carmen Vargas
Laszlo Csonka
Angel Sevilla
José L Iborra
Joaquín J Nieto
Manuel Cánovas
Universidad de Murcia · ESUniversidad de Sevilla · ESPurdue University West Lafayette · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial osmoadaptation involves the cytoplasmic accumulation of compatible solutes to counteract extracellular osmolarity. The halophilic and highly halotolerant bacterium Chromohalobacter salexigens is able to grow up to 3 m NaCl in a minimal medium due to the de novo synthesis of ectoines. This is an osmoregulated pathway that burdens central metabolic routes by quantitatively drawing off TCA cycle intermediaries. Consequently, metabolism in C. salexigens has adapted to support this biosynthetic route. Metabolism of C. salexigens is more efficient at high salinity than at low salinity, as reflected by lower glucose consumption, lower metabolite overflow, and higher biomass yield. At low salinity, by-products (mainly gluconate, pyruvate, and acetate) accumulate extracellularly. Using [1-(13)C]-, [2-(13)C]-, [6-(13)C]-, and [U-(13)C6]glucose as carbon sources, we were able to determine the main central metabolic pathways involved in ectoines biosynthesis from glucose. C. salexigens uses the Entner-Doudoroff pathway rather than the standard glycolytic pathway for glucose catabolism, and anaplerotic activity is high to replenish the TCA cycle with the intermediaries withdrawn for ectoines biosynthesis. Metabolic flux ratios at low and high salinity were similar, revealing a certain metabolic rigidity, probably due to its specialization to support high biosynthetic fluxes and partially explaining why metabolic yields are so highly affected by salinity. This work represents an important contribution to the elucidation of specific metabolic adaptations in compatible solute-accumulating halophilic bacteria.

Indexed as

Salt ToleranceAmino AcidsAmino Acids, DiaminoBacterial ProteinsBiomassCarbohydrate MetabolismCarboxylic AcidsChromohalobacterCitric Acid CycleComputational BiologyGlucoseMetabolic Networks and PathwaysSalinitySodium ChlorideStaining and LabelingAmino AcidsAmino Acids, DiaminoBacterial ProteinsCarboxylic AcidsectoineGlucoseSodium ChlorideEctoinesEntner-DoudoroffHalophilic BacteriaMetabolic TracersMetabolismMicrobiologyNuclear Magnetic ResonanceOverflow MetabolismPyruvate CarboxylaseSalt Adaptation

Identifiers

PMID23615905
PMCPMC3682576
OpenAlexW2092602079

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.