Evidence map›Paper›PMID 23614626›Full record

ArticleBiochemistry2013

Insights into BAY 60-2770 activation and S-nitrosylation-dependent desensitization of soluble guanylyl cyclase via crystal structures of homologous nostoc H-NOX domain complexes.

Vijay Kumar, Faye Martin, Michael G Hahn, Martina Schaefer, Jonathan S Stamler, Johannes-Peter Stasch, Focco van den Akker

Abstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Computational Structural Biology ofFrontiers in oncology · 2018
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Bacterial Haemoprotein Sensors of NO: H-NOX and NosP.Advances in microbial physiology · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Vijay KumarDepartment of Biochemistry, Case Western Reserve University , Cleveland, Ohio 44106, United States.
Faye Martin
Michael G Hahn
Martina Schaefer
Jonathan S Stamler
Johannes-Peter Stasch
Focco van den Akker
Bayer (Germany) · DECase Western Reserve University · USUniversity Hospitals Case Medical Center · US

Funding

Soluble guanylyl cyclase: mechanisms of activation and modulationR01HL075329 · NHLBI · CASE WESTERN RESERVE UNIVERSITY · PI VAN DEN AKKER, FOCCO · 2005 to 2014
$2.7M
NHLBI NIH HHS R01 HL075329
6 · The paper itself

Abstract

The soluble guanylyl cyclase (sGC) is an important receptor for nitric oxide (NO). Nitric oxide activates sGC several hundred fold to generate cGMP from GTP. Because of sGC's salutary roles in cardiovascular physiology, it has received substantial attention as a drug target. The heme domain of sGC is key to its regulation as it not only contains the NO activation site but also harbors sites for NO-independent sGC activators as well an S-nitrosylation site (β1 C122) involved in desensitization. Here we report the crystal structure of the activator BAY 60-2770 bound to the Nostoc H-NOX domain that is homologous to sGC. The structure reveals that BAY 60-2770 has displaced the heme and acts as a heme mimetic via carboxylate-mediated interactions with the conserved YxSxR motif as well as hydrophobic interactions. Comparisons with the previously determined BAY 58-2667 bound structure reveal that BAY 60-2770 is more ordered in its hydrophobic tail region. sGC activity assays demonstrate that BAY 60-2770 has about 10% higher fold maximal stimulation compared to BAY 58-2667. S-Nitrosylation of the BAY 60-2770 substituted Nostoc H-NOX domain causes subtle changes in the vicinity of the S-nitrosylated C122 residue. These shifts could impact the adjacent YxSxR motif and αF helix and as such potentially inhibit either heme incorporation or NO-activation of sGC and thus provide a structural basis for desensitization.

Indexed as

Bacterial ProteinsBenzoatesBiphenyl CompoundsCrystallography, X-RayGuanylate CyclaseHydrocarbons, FluorinatedModels, MolecularNitric OxideNostocProtein Structure, TertiaryReceptors, Cytoplasmic and NuclearSoluble Guanylyl Cyclase4-(((4-carboxybutyl) (2- (5-fluoro-2-((4'-(trifluoromethyl) biphenyl-4-yl)methoxy)phenyl)ethyl) amino)methyl)benzoic acidBacterial ProteinsBenzoatesBiphenyl CompoundsGuanylate CyclaseHydrocarbons, FluorinatedNitric OxideReceptors, Cytoplasmic and NuclearSoluble Guanylyl Cyclase

Identifiers

PMID23614626
PMCPMC3775905
OpenAlexW2164424854

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.