Evidence map›Paper›PMID 23613724›Full record

ArticlePloS one2013

Determining the population frequency of the CFHR3/CFHR1 deletion at 1q32.

Lucy V Holmes, Lisa Strain, Scott J Staniforth, Iain Moore, Kevin Marchbank, David Kavanagh, Judith A Goodship, Heather J Cordell, Timothy H J Goodship

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed, 2 pooled it
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 2 syntheses or guidelines pooled it, 122 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Role of factor H-related protein 3 inFrontiers in immunology · 2024
    Article
  12. Article
  13. Review
  14. The role of complement in kidney disease.Nature reviews. Nephrology · 2023
    Review
  15. Review
  16. Targeting complement in IgA nephropathy.Clinical kidney journal · 2023
    Review
  17. Article
  18. Article
  19. Review
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Lucy V HolmesInstitutes of Genetic and Cellular Medicine, Newcastle University, Newcastle upon Tyne, United Kingdom.
Lisa Strain
Scott J Staniforth
Iain Moore
Kevin Marchbank
David Kavanagh
Judith A Goodship
Heather J Cordell
Timothy H J Goodship
Newcastle University · GBNewcastle upon Tyne Hospitals NHS Foundation Trust · GB

Funding

Medical Research Council G0701325Wellcome TrustWellcome Trust 061858Wellcome Trust 076113/C/04/Z
6 · The paper itself

Abstract

In this study we have used multiplex ligation-dependent probe amplification (MLPA) to measure the copy number of CFHR3 and CFHR1 in DNA samples from 238 individuals from the UK and 439 individuals from the HGDP-CEPH Human Genome Diversity Cell Line Panel. We have then calculated the allele frequency and frequency of homozygosity for the copy number polymorphism represented by the CFHR3/CFHR1 deletion. There was a highly significant difference between geographical locations in both the allele frequency (X(2)  = 127.7, DF = 11, P-value = 4.97x10(-22)) and frequency of homozygosity (X(2)  = 142.3, DF = 22, P-value = 1.33x10(-19)). The highest frequency for the deleted allele (54.7%) was seen in DNA samples from Nigeria and the lowest (0%) in samples from South America and Japan. The observed frequencies in conjunction with the known association of the deletion with AMD, SLE and IgA nephropathy is in keeping with differences in the prevalence of these diseases in African and European Americans. This emphasises the importance of identifying copy number polymorphism in disease.

Indexed as

Complement C3b Inactivator ProteinsGene FrequencyHumansSequence DeletionCFHR1 protein, humanComplement C3b Inactivator Proteins

Identifiers

PMID23613724
PMCPMC3629053
OpenAlexW2010448151

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.