Evidence map›Paper›PMID 23612970›Full record

ArticleThe Journal of biological chemistry2013

Batroxobin binds fibrin with higher affinity and promotes clot expansion to a greater extent than thrombin.

Trang T Vu, Alan R Stafford, Beverly A Leslie, Paul Y Kim, James C Fredenburgh, Jeffrey I Weitz

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Review
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  15. Article
  16. Toxins · 2023
    Article
  17. Fibrinogen BOE II: dysfibrinogenemia with bleeding and defective thrombin binding.Research and practice in thrombosis and haemostasis · 2023
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Trang T VuThrombosis and Atherosclerosis Research Institute, Hamilton, Ontario L8L 2X2, Canada; Departments of Medical Sciences, Hamilton, Ontario L8L 2X2, Canada.
Alan R StaffordThrombosis and Atherosclerosis Research Institute, Hamilton, Ontario L8L 2X2, Canada; Medicine, Hamilton, Ontario L8L 2X2, Canada.
Beverly A LeslieThrombosis and Atherosclerosis Research Institute, Hamilton, Ontario L8L 2X2, Canada; Medicine, Hamilton, Ontario L8L 2X2, Canada.
Paul Y KimThrombosis and Atherosclerosis Research Institute, Hamilton, Ontario L8L 2X2, Canada; Medicine, Hamilton, Ontario L8L 2X2, Canada.
James C FredenburghThrombosis and Atherosclerosis Research Institute, Hamilton, Ontario L8L 2X2, Canada; Medicine, Hamilton, Ontario L8L 2X2, Canada.
Jeffrey I WeitzThrombosis and Atherosclerosis Research Institute, Hamilton, Ontario L8L 2X2, Canada; Departments of Medical Sciences, Hamilton, Ontario L8L 2X2, Canada; Medicine, Hamilton, Ontario L8L 2X2, Canada; Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario L8L 2X2, Canada. Electronic address: weitzj@taari.ca.

Funding

Canadian Institutes of Health Research CTP 79846Canadian Institutes of Health Research MOP 102735Canadian Institutes of Health Research MOP 3992
6 · The paper itself

Abstract

Batroxobin is a thrombin-like serine protease from the venom of Bothrops atrox moojeni that clots fibrinogen. In contrast to thrombin, which releases fibrinopeptide A and B from the NH2-terminal domains of the Aα- and Bβ-chains of fibrinogen, respectively, batroxobin only releases fibrinopeptide A. Because the mechanism responsible for these differences is unknown, we compared the interactions of batroxobin and thrombin with the predominant γA/γA isoform of fibrin(ogen) and the γA/γ' variant with an extended γ-chain. Thrombin binds to the γ'-chain and forms a higher affinity interaction with γA/γ'-fibrin(ogen) than γA/γA-fibrin(ogen). In contrast, batroxobin binds both fibrin(ogen) isoforms with similar high affinity (Kd values of about 0.5 μM) even though it does not interact with the γ'-chain. The batroxobin-binding sites on fibrin(ogen) only partially overlap with those of thrombin because thrombin attenuates, but does not abrogate, the interaction of γA/γA-fibrinogen with batroxobin. Furthermore, although both thrombin and batroxobin bind to the central E-region of fibrinogen with a Kd value of 2-5 μM, the α(17-51) and Bβ(1-42) regions bind thrombin but not batroxobin. Once bound to fibrin, the capacity of batroxobin to promote fibrin accretion is 18-fold greater than that of thrombin, a finding that may explain the microvascular thrombosis that complicates envenomation by B. atrox moojeni. Therefore, batroxobin binds fibrin(ogen) in a manner distinct from thrombin, which may contribute to its higher affinity interaction, selective fibrinopeptide A release, and prothrombotic properties.

Indexed as

AnimalsBatroxobinBinding SitesFibrinopeptide AHumansProtein BindingProtein IsoformsThrombinBatroxobinFibrinopeptide AProtein IsoformsThrombinBatroxobinBlood Coagulation FactorsFibrinFibrinogenFibrinopeptidesSnake VenomThrombin

Identifiers

PMID23612970
PMCPMC3675619

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.